Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Col6a6Q8C6K9 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Col6a6Q8C6K9 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
Col6a6Q8C6K9 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
Col6a6Q8C6K9 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC23.56■■□□□ 1.36
Col6a6Q8C6K9 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
Col6a6Q8C6K9 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Col6a6Q8C6K9 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.55■■□□□ 1.36
Col6a6Q8C6K9 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
Col6a6Q8C6K9 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Col6a6Q8C6K9 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Col6a6Q8C6K9 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
Col6a6Q8C6K9 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC23.5■■□□□ 1.35
Col6a6Q8C6K9 Gm6821-201ENSMUST00000107540 542 ntBASIC23.49■■□□□ 1.35
Col6a6Q8C6K9 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Col6a6Q8C6K9 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Col6a6Q8C6K9 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Col6a6Q8C6K9 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
Col6a6Q8C6K9 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Col6a6Q8C6K9 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
Col6a6Q8C6K9 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Col6a6Q8C6K9 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.34
Col6a6Q8C6K9 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
Col6a6Q8C6K9 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Col6a6Q8C6K9 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Col6a6Q8C6K9 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Col6a6Q8C6K9 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Col6a6Q8C6K9 Gm42809-201ENSMUST00000198429 1138 ntBASIC23.39■■□□□ 1.34
Col6a6Q8C6K9 AC157572.2-201ENSMUST00000226970 908 ntBASIC23.39■■□□□ 1.33
Col6a6Q8C6K9 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Col6a6Q8C6K9 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Col6a6Q8C6K9 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Col6a6Q8C6K9 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Col6a6Q8C6K9 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Col6a6Q8C6K9 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Col6a6Q8C6K9 Gm43863-201ENSMUST00000203822 1192 ntBASIC23.35■■□□□ 1.33
Col6a6Q8C6K9 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col6a6Q8C6K9 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Col6a6Q8C6K9 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Col6a6Q8C6K9 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col6a6Q8C6K9 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC23.3■■□□□ 1.32
Col6a6Q8C6K9 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
Col6a6Q8C6K9 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col6a6Q8C6K9 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Col6a6Q8C6K9 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC23.25■■□□□ 1.31
Col6a6Q8C6K9 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Col6a6Q8C6K9 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col6a6Q8C6K9 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Col6a6Q8C6K9 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Col6a6Q8C6K9 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col6a6Q8C6K9 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Col6a6Q8C6K9 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC23.23■■□□□ 1.31
Col6a6Q8C6K9 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Col6a6Q8C6K9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Col6a6Q8C6K9 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC23.21■■□□□ 1.31
Col6a6Q8C6K9 Gm7432-201ENSMUST00000210343 879 ntBASIC23.21■■□□□ 1.31
Col6a6Q8C6K9 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Col6a6Q8C6K9 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col6a6Q8C6K9 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col6a6Q8C6K9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Col6a6Q8C6K9 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Col6a6Q8C6K9 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Col6a6Q8C6K9 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Col6a6Q8C6K9 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col6a6Q8C6K9 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col6a6Q8C6K9 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC23.15■■□□□ 1.3
Col6a6Q8C6K9 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Col6a6Q8C6K9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Col6a6Q8C6K9 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Col6a6Q8C6K9 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC23.11■■□□□ 1.29
Col6a6Q8C6K9 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Col6a6Q8C6K9 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Col6a6Q8C6K9 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Col6a6Q8C6K9 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC23.09■■□□□ 1.29
Col6a6Q8C6K9 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
Col6a6Q8C6K9 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Col6a6Q8C6K9 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC23.06■■□□□ 1.28
Col6a6Q8C6K9 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
Col6a6Q8C6K9 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Col6a6Q8C6K9 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Col6a6Q8C6K9 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Col6a6Q8C6K9 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Col6a6Q8C6K9 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
Col6a6Q8C6K9 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
Col6a6Q8C6K9 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Col6a6Q8C6K9 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
Col6a6Q8C6K9 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Col6a6Q8C6K9 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
Col6a6Q8C6K9 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC23.01■■□□□ 1.27
Col6a6Q8C6K9 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC23.01■■□□□ 1.27
Col6a6Q8C6K9 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC23.01■■□□□ 1.27
Col6a6Q8C6K9 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
Col6a6Q8C6K9 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Col6a6Q8C6K9 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC22.99■■□□□ 1.27
Col6a6Q8C6K9 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Col6a6Q8C6K9 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Col6a6Q8C6K9 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
Col6a6Q8C6K9 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
Col6a6Q8C6K9 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Col6a6Q8C6K9 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC22.97■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms