Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Zfp131-205ENSMUST00000223812 663 ntBASIC24.33■■□□□ 1.49
Cpsf4Q8BQZ5 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cpsf4Q8BQZ5 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cpsf4Q8BQZ5 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cpsf4Q8BQZ5 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cpsf4Q8BQZ5 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cpsf4Q8BQZ5 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cpsf4Q8BQZ5 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Cpsf4Q8BQZ5 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Cpsf4Q8BQZ5 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Cpsf4Q8BQZ5 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
Cpsf4Q8BQZ5 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Cpsf4Q8BQZ5 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Cpsf4Q8BQZ5 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Cpsf4Q8BQZ5 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
Cpsf4Q8BQZ5 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
Cpsf4Q8BQZ5 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Cpsf4Q8BQZ5 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Cpsf4Q8BQZ5 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC24.22■■□□□ 1.47
Cpsf4Q8BQZ5 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Cpsf4Q8BQZ5 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC24.19■■□□□ 1.46
Cpsf4Q8BQZ5 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
Cpsf4Q8BQZ5 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Cpsf4Q8BQZ5 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC24.18■■□□□ 1.46
Cpsf4Q8BQZ5 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC24.18■■□□□ 1.46
Cpsf4Q8BQZ5 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Cpsf4Q8BQZ5 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC24.17■■□□□ 1.46
Cpsf4Q8BQZ5 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Cpsf4Q8BQZ5 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Cpsf4Q8BQZ5 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Cpsf4Q8BQZ5 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC24.14■■□□□ 1.45
Cpsf4Q8BQZ5 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Cpsf4Q8BQZ5 Zxda-201ENSMUST00000117281 2621 ntBASIC24.14■■□□□ 1.45
Cpsf4Q8BQZ5 Gm6206-201ENSMUST00000133472 2199 ntBASIC24.13■■□□□ 1.45
Cpsf4Q8BQZ5 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Cpsf4Q8BQZ5 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Cpsf4Q8BQZ5 Gm9905-201ENSMUST00000065740 1845 ntBASIC24.12■■□□□ 1.45
Cpsf4Q8BQZ5 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
Cpsf4Q8BQZ5 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Cpsf4Q8BQZ5 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Cpsf4Q8BQZ5 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Cpsf4Q8BQZ5 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
Cpsf4Q8BQZ5 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Cpsf4Q8BQZ5 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Cpsf4Q8BQZ5 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Cpsf4Q8BQZ5 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Cpsf4Q8BQZ5 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC24.05■■□□□ 1.44
Cpsf4Q8BQZ5 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
Cpsf4Q8BQZ5 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Cpsf4Q8BQZ5 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC24.04■■□□□ 1.44
Cpsf4Q8BQZ5 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC24.03■■□□□ 1.44
Cpsf4Q8BQZ5 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC24.01■■□□□ 1.43
Cpsf4Q8BQZ5 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
Cpsf4Q8BQZ5 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
Cpsf4Q8BQZ5 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
Cpsf4Q8BQZ5 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
Cpsf4Q8BQZ5 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Cpsf4Q8BQZ5 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC24■■□□□ 1.43
Cpsf4Q8BQZ5 Gm43445-201ENSMUST00000198564 2091 ntBASIC23.99■■□□□ 1.43
Cpsf4Q8BQZ5 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC23.99■■□□□ 1.43
Cpsf4Q8BQZ5 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Cpsf4Q8BQZ5 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC23.97■■□□□ 1.43
Cpsf4Q8BQZ5 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Cpsf4Q8BQZ5 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Cpsf4Q8BQZ5 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Cpsf4Q8BQZ5 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC23.94■■□□□ 1.42
Cpsf4Q8BQZ5 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Cpsf4Q8BQZ5 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC23.94■■□□□ 1.42
Cpsf4Q8BQZ5 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Cpsf4Q8BQZ5 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Cpsf4Q8BQZ5 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Cpsf4Q8BQZ5 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC23.93■■□□□ 1.42
Cpsf4Q8BQZ5 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
Cpsf4Q8BQZ5 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Cpsf4Q8BQZ5 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
Cpsf4Q8BQZ5 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Cpsf4Q8BQZ5 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Cpsf4Q8BQZ5 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Cpsf4Q8BQZ5 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
Cpsf4Q8BQZ5 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
Cpsf4Q8BQZ5 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
Cpsf4Q8BQZ5 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Cpsf4Q8BQZ5 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Cpsf4Q8BQZ5 Gm6345-201ENSMUST00000180378 1691 ntBASIC23.87■■□□□ 1.41
Cpsf4Q8BQZ5 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Cpsf4Q8BQZ5 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Cpsf4Q8BQZ5 Tdp2-203ENSMUST00000223804 1136 ntBASIC23.86■■□□□ 1.41
Cpsf4Q8BQZ5 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Cpsf4Q8BQZ5 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Cpsf4Q8BQZ5 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Cpsf4Q8BQZ5 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Cpsf4Q8BQZ5 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Cpsf4Q8BQZ5 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
Cpsf4Q8BQZ5 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Cpsf4Q8BQZ5 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Cpsf4Q8BQZ5 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC23.81■■□□□ 1.4
Cpsf4Q8BQZ5 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Cpsf4Q8BQZ5 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Cpsf4Q8BQZ5 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cpsf4Q8BQZ5 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms