Protein–RNA interactions for Protein: Q61572

Foxc1, Forkhead box protein C1, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxc1Q61572 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Foxc1Q61572 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
Foxc1Q61572 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC18.25■□□□□ 0.51
Foxc1Q61572 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC18.24■□□□□ 0.51
Foxc1Q61572 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Foxc1Q61572 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Foxc1Q61572 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Foxc1Q61572 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Foxc1Q61572 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Foxc1Q61572 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Foxc1Q61572 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
Foxc1Q61572 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Foxc1Q61572 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Foxc1Q61572 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Foxc1Q61572 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Foxc1Q61572 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Foxc1Q61572 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Foxc1Q61572 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Foxc1Q61572 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Foxc1Q61572 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Foxc1Q61572 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Foxc1Q61572 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Foxc1Q61572 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Foxc1Q61572 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC18.16■□□□□ 0.5
Foxc1Q61572 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC18.15■□□□□ 0.5
Foxc1Q61572 Gm45855-201ENSMUST00000212546 880 ntBASIC18.15■□□□□ 0.5
Foxc1Q61572 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Foxc1Q61572 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Foxc1Q61572 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Foxc1Q61572 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Foxc1Q61572 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Foxc1Q61572 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Foxc1Q61572 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Foxc1Q61572 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Foxc1Q61572 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Foxc1Q61572 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Foxc1Q61572 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Foxc1Q61572 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC18.1■□□□□ 0.49
Foxc1Q61572 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC18.1■□□□□ 0.49
Foxc1Q61572 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Foxc1Q61572 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC18.09■□□□□ 0.49
Foxc1Q61572 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Foxc1Q61572 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Foxc1Q61572 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Foxc1Q61572 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Foxc1Q61572 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Foxc1Q61572 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Foxc1Q61572 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Foxc1Q61572 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Foxc1Q61572 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Foxc1Q61572 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Foxc1Q61572 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Foxc1Q61572 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Foxc1Q61572 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Foxc1Q61572 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Foxc1Q61572 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Foxc1Q61572 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Foxc1Q61572 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Foxc1Q61572 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Foxc1Q61572 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Foxc1Q61572 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Foxc1Q61572 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
Foxc1Q61572 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Foxc1Q61572 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Foxc1Q61572 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Foxc1Q61572 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Foxc1Q61572 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Foxc1Q61572 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Foxc1Q61572 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Foxc1Q61572 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Foxc1Q61572 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Foxc1Q61572 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Foxc1Q61572 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC17.95■□□□□ 0.46
Foxc1Q61572 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Foxc1Q61572 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Foxc1Q61572 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Foxc1Q61572 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC17.94■□□□□ 0.46
Foxc1Q61572 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Foxc1Q61572 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Foxc1Q61572 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
Foxc1Q61572 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Foxc1Q61572 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Foxc1Q61572 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Foxc1Q61572 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Foxc1Q61572 Gm30346-201ENSMUST00000218641 1699 ntBASIC17.92■□□□□ 0.46
Foxc1Q61572 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Foxc1Q61572 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
Foxc1Q61572 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Foxc1Q61572 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Foxc1Q61572 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Foxc1Q61572 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC17.91■□□□□ 0.46
Foxc1Q61572 Gm9397-201ENSMUST00000200125 605 ntBASIC17.91■□□□□ 0.46
Foxc1Q61572 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
Foxc1Q61572 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC17.9■□□□□ 0.46
Foxc1Q61572 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Foxc1Q61572 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC17.89■□□□□ 0.46
Foxc1Q61572 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Foxc1Q61572 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Foxc1Q61572 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Foxc1Q61572 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms