Protein–RNA interactions for Protein: P61025

Cks1b, Cyclin-dependent kinases regulatory subunit 1, mousemouse

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cks1bP61025 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cks1bP61025 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cks1bP61025 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cks1bP61025 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC17.64■□□□□ 0.41
Cks1bP61025 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Cks1bP61025 Rab21-202ENSMUST00000218831 843 ntBASIC17.63■□□□□ 0.41
Cks1bP61025 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cks1bP61025 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cks1bP61025 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC17.62■□□□□ 0.41
Cks1bP61025 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Cks1bP61025 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cks1bP61025 Gm9905-201ENSMUST00000065740 1845 ntBASIC17.6■□□□□ 0.41
Cks1bP61025 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cks1bP61025 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cks1bP61025 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cks1bP61025 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Cks1bP61025 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Cks1bP61025 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cks1bP61025 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cks1bP61025 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC17.57■□□□□ 0.4
Cks1bP61025 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cks1bP61025 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cks1bP61025 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cks1bP61025 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cks1bP61025 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cks1bP61025 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cks1bP61025 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cks1bP61025 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cks1bP61025 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC17.53■□□□□ 0.4
Cks1bP61025 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Cks1bP61025 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cks1bP61025 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Cks1bP61025 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Cks1bP61025 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cks1bP61025 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cks1bP61025 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cks1bP61025 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cks1bP61025 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cks1bP61025 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cks1bP61025 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC17.5■□□□□ 0.39
Cks1bP61025 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.49■□□□□ 0.39
Cks1bP61025 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cks1bP61025 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Cks1bP61025 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cks1bP61025 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cks1bP61025 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cks1bP61025 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cks1bP61025 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cks1bP61025 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cks1bP61025 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cks1bP61025 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cks1bP61025 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cks1bP61025 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Cks1bP61025 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cks1bP61025 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cks1bP61025 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cks1bP61025 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cks1bP61025 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cks1bP61025 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Cks1bP61025 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cks1bP61025 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cks1bP61025 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cks1bP61025 Gm6206-201ENSMUST00000133472 2199 ntBASIC17.41■□□□□ 0.38
Cks1bP61025 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cks1bP61025 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cks1bP61025 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cks1bP61025 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Cks1bP61025 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cks1bP61025 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC17.38■□□□□ 0.37
Cks1bP61025 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cks1bP61025 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cks1bP61025 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cks1bP61025 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Cks1bP61025 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
Cks1bP61025 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cks1bP61025 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cks1bP61025 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cks1bP61025 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cks1bP61025 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Cks1bP61025 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cks1bP61025 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cks1bP61025 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cks1bP61025 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cks1bP61025 Mipep-204ENSMUST00000225043 1548 ntBASIC17.31■□□□□ 0.36
Cks1bP61025 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC17.31■□□□□ 0.36
Cks1bP61025 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cks1bP61025 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cks1bP61025 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cks1bP61025 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Cks1bP61025 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cks1bP61025 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cks1bP61025 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cks1bP61025 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Cks1bP61025 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cks1bP61025 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
Cks1bP61025 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cks1bP61025 AL845457.1-201ENSMUST00000197244 68 ntBASIC17.28■□□□□ 0.36
Cks1bP61025 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Cks1bP61025 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cks1bP61025 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms