Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Pcdh1F7BJK1 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC22.76■■□□□ 1.23
Pcdh1F7BJK1 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Pcdh1F7BJK1 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC22.74■■□□□ 1.23
Pcdh1F7BJK1 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Pcdh1F7BJK1 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
Pcdh1F7BJK1 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdh1F7BJK1 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Pcdh1F7BJK1 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Pcdh1F7BJK1 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC22.71■■□□□ 1.23
Pcdh1F7BJK1 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
Pcdh1F7BJK1 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.23
Pcdh1F7BJK1 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Pcdh1F7BJK1 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Pcdh1F7BJK1 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Pcdh1F7BJK1 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.7■■□□□ 1.22
Pcdh1F7BJK1 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC22.69■■□□□ 1.22
Pcdh1F7BJK1 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Pcdh1F7BJK1 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
Pcdh1F7BJK1 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Pcdh1F7BJK1 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Pcdh1F7BJK1 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Pcdh1F7BJK1 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Pcdh1F7BJK1 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Pcdh1F7BJK1 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdh1F7BJK1 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC22.64■■□□□ 1.21
Pcdh1F7BJK1 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdh1F7BJK1 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdh1F7BJK1 AC166822.3-201ENSMUST00000227394 661 ntBASIC22.63■■□□□ 1.21
Pcdh1F7BJK1 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
Pcdh1F7BJK1 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC22.62■■□□□ 1.21
Pcdh1F7BJK1 Fezf2-202ENSMUST00000224023 1917 ntBASIC22.62■■□□□ 1.21
Pcdh1F7BJK1 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Pcdh1F7BJK1 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC22.61■■□□□ 1.21
Pcdh1F7BJK1 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Pcdh1F7BJK1 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC22.61■■□□□ 1.21
Pcdh1F7BJK1 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC22.61■■□□□ 1.21
Pcdh1F7BJK1 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Pcdh1F7BJK1 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdh1F7BJK1 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdh1F7BJK1 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC22.59■■□□□ 1.21
Pcdh1F7BJK1 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdh1F7BJK1 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdh1F7BJK1 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC22.59■■□□□ 1.21
Pcdh1F7BJK1 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC22.58■■□□□ 1.2
Pcdh1F7BJK1 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdh1F7BJK1 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdh1F7BJK1 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC22.57■■□□□ 1.2
Pcdh1F7BJK1 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Pcdh1F7BJK1 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdh1F7BJK1 Gm30346-201ENSMUST00000218641 1699 ntBASIC22.55■■□□□ 1.2
Pcdh1F7BJK1 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdh1F7BJK1 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC22.54■■□□□ 1.2
Pcdh1F7BJK1 Gm17082-201ENSMUST00000166043 1091 ntBASIC22.53■■□□□ 1.2
Pcdh1F7BJK1 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
Pcdh1F7BJK1 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdh1F7BJK1 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdh1F7BJK1 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdh1F7BJK1 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC22.51■■□□□ 1.19
Pcdh1F7BJK1 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdh1F7BJK1 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdh1F7BJK1 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdh1F7BJK1 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pcdh1F7BJK1 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pcdh1F7BJK1 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdh1F7BJK1 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdh1F7BJK1 Gm27322-201ENSMUST00000184007 104 ntBASIC22.47■■□□□ 1.19
Pcdh1F7BJK1 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdh1F7BJK1 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
Pcdh1F7BJK1 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdh1F7BJK1 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdh1F7BJK1 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
Pcdh1F7BJK1 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Pcdh1F7BJK1 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdh1F7BJK1 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdh1F7BJK1 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Pcdh1F7BJK1 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Pcdh1F7BJK1 Gm26115-201ENSMUST00000175605 87 ntBASIC22.42■■□□□ 1.18
Pcdh1F7BJK1 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Pcdh1F7BJK1 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdh1F7BJK1 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdh1F7BJK1 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdh1F7BJK1 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Pcdh1F7BJK1 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Pcdh1F7BJK1 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
Pcdh1F7BJK1 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
Pcdh1F7BJK1 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC22.39■■□□□ 1.17
Pcdh1F7BJK1 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pcdh1F7BJK1 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pcdh1F7BJK1 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
Pcdh1F7BJK1 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC22.37■■□□□ 1.17
Pcdh1F7BJK1 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Pcdh1F7BJK1 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
Pcdh1F7BJK1 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Pcdh1F7BJK1 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Pcdh1F7BJK1 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Pcdh1F7BJK1 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Pcdh1F7BJK1 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Pcdh1F7BJK1 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC22.32■■□□□ 1.16
Pcdh1F7BJK1 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms