Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trbv5A0A0B4J1G9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.21■□□□□ 0.83
Trbv5A0A0B4J1G9 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trbv5A0A0B4J1G9 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC20.2■□□□□ 0.82
Trbv5A0A0B4J1G9 Mipep-204ENSMUST00000225043 1548 ntBASIC20.2■□□□□ 0.82
Trbv5A0A0B4J1G9 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trbv5A0A0B4J1G9 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.17■□□□□ 0.82
Trbv5A0A0B4J1G9 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trbv5A0A0B4J1G9 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trbv5A0A0B4J1G9 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Trbv5A0A0B4J1G9 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trbv5A0A0B4J1G9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.14■□□□□ 0.81
Trbv5A0A0B4J1G9 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trbv5A0A0B4J1G9 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trbv5A0A0B4J1G9 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trbv5A0A0B4J1G9 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv5A0A0B4J1G9 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv5A0A0B4J1G9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv5A0A0B4J1G9 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv5A0A0B4J1G9 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trbv5A0A0B4J1G9 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trbv5A0A0B4J1G9 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.11■□□□□ 0.81
Trbv5A0A0B4J1G9 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.11■□□□□ 0.81
Trbv5A0A0B4J1G9 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Trbv5A0A0B4J1G9 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trbv5A0A0B4J1G9 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trbv5A0A0B4J1G9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trbv5A0A0B4J1G9 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trbv5A0A0B4J1G9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trbv5A0A0B4J1G9 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20.09■□□□□ 0.81
Trbv5A0A0B4J1G9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC20.09■□□□□ 0.81
Trbv5A0A0B4J1G9 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trbv5A0A0B4J1G9 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trbv5A0A0B4J1G9 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trbv5A0A0B4J1G9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Trbv5A0A0B4J1G9 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC20.05■□□□□ 0.8
Trbv5A0A0B4J1G9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trbv5A0A0B4J1G9 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trbv5A0A0B4J1G9 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trbv5A0A0B4J1G9 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC20.05■□□□□ 0.8
Trbv5A0A0B4J1G9 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Trbv5A0A0B4J1G9 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trbv5A0A0B4J1G9 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trbv5A0A0B4J1G9 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trbv5A0A0B4J1G9 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trbv5A0A0B4J1G9 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trbv5A0A0B4J1G9 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
Trbv5A0A0B4J1G9 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trbv5A0A0B4J1G9 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trbv5A0A0B4J1G9 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Trbv5A0A0B4J1G9 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trbv5A0A0B4J1G9 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trbv5A0A0B4J1G9 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trbv5A0A0B4J1G9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
Trbv5A0A0B4J1G9 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trbv5A0A0B4J1G9 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trbv5A0A0B4J1G9 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC19.98■□□□□ 0.79
Trbv5A0A0B4J1G9 AL845457.1-201ENSMUST00000197244 68 ntBASIC19.97■□□□□ 0.79
Trbv5A0A0B4J1G9 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trbv5A0A0B4J1G9 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC19.96■□□□□ 0.79
Trbv5A0A0B4J1G9 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Trbv5A0A0B4J1G9 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Trbv5A0A0B4J1G9 Rab21-202ENSMUST00000218831 843 ntBASIC19.96■□□□□ 0.79
Trbv5A0A0B4J1G9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trbv5A0A0B4J1G9 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trbv5A0A0B4J1G9 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trbv5A0A0B4J1G9 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trbv5A0A0B4J1G9 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trbv5A0A0B4J1G9 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trbv5A0A0B4J1G9 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trbv5A0A0B4J1G9 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Trbv5A0A0B4J1G9 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trbv5A0A0B4J1G9 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trbv5A0A0B4J1G9 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trbv5A0A0B4J1G9 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trbv5A0A0B4J1G9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trbv5A0A0B4J1G9 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trbv5A0A0B4J1G9 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trbv5A0A0B4J1G9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Trbv5A0A0B4J1G9 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trbv5A0A0B4J1G9 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trbv5A0A0B4J1G9 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trbv5A0A0B4J1G9 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trbv5A0A0B4J1G9 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trbv5A0A0B4J1G9 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trbv5A0A0B4J1G9 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trbv5A0A0B4J1G9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Trbv5A0A0B4J1G9 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trbv5A0A0B4J1G9 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trbv5A0A0B4J1G9 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trbv5A0A0B4J1G9 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trbv5A0A0B4J1G9 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trbv5A0A0B4J1G9 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trbv5A0A0B4J1G9 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trbv5A0A0B4J1G9 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Trbv5A0A0B4J1G9 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trbv5A0A0B4J1G9 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trbv5A0A0B4J1G9 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trbv5A0A0B4J1G9 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trbv5A0A0B4J1G9 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms