Protein–RNA interactions for Protein: A0A075B6A4

Trav12d-3, T cell receptor alpha variable 12D-3 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav12d-3A0A075B6A4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav12d-3A0A075B6A4 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav12d-3A0A075B6A4 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav12d-3A0A075B6A4 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav12d-3A0A075B6A4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trav12d-3A0A075B6A4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav12d-3A0A075B6A4 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC18.98■□□□□ 0.63
Trav12d-3A0A075B6A4 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav12d-3A0A075B6A4 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav12d-3A0A075B6A4 Gm27325-201ENSMUST00000175467 74 ntBASIC18.97■□□□□ 0.63
Trav12d-3A0A075B6A4 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Trav12d-3A0A075B6A4 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav12d-3A0A075B6A4 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Trav12d-3A0A075B6A4 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav12d-3A0A075B6A4 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trav12d-3A0A075B6A4 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav12d-3A0A075B6A4 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trav12d-3A0A075B6A4 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav12d-3A0A075B6A4 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav12d-3A0A075B6A4 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Trav12d-3A0A075B6A4 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trav12d-3A0A075B6A4 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Trav12d-3A0A075B6A4 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav12d-3A0A075B6A4 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trav12d-3A0A075B6A4 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav12d-3A0A075B6A4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC18.9■□□□□ 0.62
Trav12d-3A0A075B6A4 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trav12d-3A0A075B6A4 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav12d-3A0A075B6A4 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav12d-3A0A075B6A4 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC18.88■□□□□ 0.61
Trav12d-3A0A075B6A4 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav12d-3A0A075B6A4 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC18.86■□□□□ 0.61
Trav12d-3A0A075B6A4 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC18.86■□□□□ 0.61
Trav12d-3A0A075B6A4 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav12d-3A0A075B6A4 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav12d-3A0A075B6A4 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav12d-3A0A075B6A4 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Trav12d-3A0A075B6A4 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav12d-3A0A075B6A4 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav12d-3A0A075B6A4 Gm6345-201ENSMUST00000180378 1691 ntBASIC18.85■□□□□ 0.61
Trav12d-3A0A075B6A4 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trav12d-3A0A075B6A4 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trav12d-3A0A075B6A4 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav12d-3A0A075B6A4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav12d-3A0A075B6A4 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav12d-3A0A075B6A4 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav12d-3A0A075B6A4 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav12d-3A0A075B6A4 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav12d-3A0A075B6A4 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav12d-3A0A075B6A4 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav12d-3A0A075B6A4 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav12d-3A0A075B6A4 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trav12d-3A0A075B6A4 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Trav12d-3A0A075B6A4 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trav12d-3A0A075B6A4 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trav12d-3A0A075B6A4 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC18.76■□□□□ 0.59
Trav12d-3A0A075B6A4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC18.76■□□□□ 0.59
Trav12d-3A0A075B6A4 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav12d-3A0A075B6A4 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav12d-3A0A075B6A4 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trav12d-3A0A075B6A4 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav12d-3A0A075B6A4 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav12d-3A0A075B6A4 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav12d-3A0A075B6A4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Trav12d-3A0A075B6A4 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav12d-3A0A075B6A4 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trav12d-3A0A075B6A4 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.71■□□□□ 0.59
Trav12d-3A0A075B6A4 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav12d-3A0A075B6A4 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav12d-3A0A075B6A4 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav12d-3A0A075B6A4 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav12d-3A0A075B6A4 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Trav12d-3A0A075B6A4 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Trav12d-3A0A075B6A4 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
Trav12d-3A0A075B6A4 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav12d-3A0A075B6A4 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Trav12d-3A0A075B6A4 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav12d-3A0A075B6A4 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav12d-3A0A075B6A4 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav12d-3A0A075B6A4 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav12d-3A0A075B6A4 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav12d-3A0A075B6A4 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav12d-3A0A075B6A4 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Trav12d-3A0A075B6A4 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Trav12d-3A0A075B6A4 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav12d-3A0A075B6A4 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav12d-3A0A075B6A4 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav12d-3A0A075B6A4 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav12d-3A0A075B6A4 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav12d-3A0A075B6A4 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Trav12d-3A0A075B6A4 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav12d-3A0A075B6A4 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trav12d-3A0A075B6A4 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav12d-3A0A075B6A4 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav12d-3A0A075B6A4 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav12d-3A0A075B6A4 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav12d-3A0A075B6A4 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC18.58■□□□□ 0.56
Trav12d-3A0A075B6A4 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav12d-3A0A075B6A4 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav12d-3A0A075B6A4 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms