Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps28Q9D1C8 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps28Q9D1C8 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps28Q9D1C8 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Vps28Q9D1C8 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Vps28Q9D1C8 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Vps28Q9D1C8 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Vps28Q9D1C8 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Vps28Q9D1C8 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Vps28Q9D1C8 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps28Q9D1C8 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
Vps28Q9D1C8 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.65■□□□□ 0.74
Vps28Q9D1C8 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps28Q9D1C8 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps28Q9D1C8 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Vps28Q9D1C8 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC19.64■□□□□ 0.74
Vps28Q9D1C8 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps28Q9D1C8 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Vps28Q9D1C8 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Vps28Q9D1C8 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.64■□□□□ 0.73
Vps28Q9D1C8 Gm18671-201ENSMUST00000214826 683 ntBASIC19.64■□□□□ 0.73
Vps28Q9D1C8 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps28Q9D1C8 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps28Q9D1C8 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps28Q9D1C8 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
Vps28Q9D1C8 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Vps28Q9D1C8 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Vps28Q9D1C8 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.62■□□□□ 0.73
Vps28Q9D1C8 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Vps28Q9D1C8 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC19.62■□□□□ 0.73
Vps28Q9D1C8 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Vps28Q9D1C8 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Vps28Q9D1C8 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Vps28Q9D1C8 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
Vps28Q9D1C8 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps28Q9D1C8 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps28Q9D1C8 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps28Q9D1C8 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps28Q9D1C8 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps28Q9D1C8 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps28Q9D1C8 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps28Q9D1C8 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps28Q9D1C8 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps28Q9D1C8 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps28Q9D1C8 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Gm42569-201ENSMUST00000200539 472 ntBASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Vps28Q9D1C8 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Vps28Q9D1C8 Reep4-203ENSMUST00000226563 1444 ntBASIC19.59■□□□□ 0.73
Vps28Q9D1C8 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms