Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Clp1Q99LI9 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Clp1Q99LI9 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Clp1Q99LI9 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Clp1Q99LI9 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Clp1Q99LI9 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Clp1Q99LI9 Gm12896-201ENSMUST00000118430 226 ntBASIC20.4■□□□□ 0.86
Clp1Q99LI9 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Clp1Q99LI9 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
Clp1Q99LI9 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.4■□□□□ 0.86
Clp1Q99LI9 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Clp1Q99LI9 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.4■□□□□ 0.86
Clp1Q99LI9 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Clp1Q99LI9 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Clp1Q99LI9 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Clp1Q99LI9 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Clp1Q99LI9 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Clp1Q99LI9 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.39■□□□□ 0.86
Clp1Q99LI9 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.39■□□□□ 0.85
Clp1Q99LI9 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Clp1Q99LI9 Gm5643-201ENSMUST00000117081 966 ntBASIC20.39■□□□□ 0.85
Clp1Q99LI9 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Clp1Q99LI9 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Clp1Q99LI9 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Clp1Q99LI9 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Clp1Q99LI9 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Clp1Q99LI9 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Clp1Q99LI9 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Clp1Q99LI9 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Clp1Q99LI9 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Gm7977-201ENSMUST00000193787 748 ntBASIC20.38■□□□□ 0.85
Clp1Q99LI9 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Clp1Q99LI9 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Clp1Q99LI9 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Clp1Q99LI9 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.37■□□□□ 0.85
Clp1Q99LI9 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Clp1Q99LI9 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Clp1Q99LI9 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Clp1Q99LI9 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Clp1Q99LI9 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Clp1Q99LI9 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Clp1Q99LI9 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Clp1Q99LI9 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clp1Q99LI9 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
Clp1Q99LI9 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clp1Q99LI9 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
Clp1Q99LI9 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clp1Q99LI9 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clp1Q99LI9 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clp1Q99LI9 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Clp1Q99LI9 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Clp1Q99LI9 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Clp1Q99LI9 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Clp1Q99LI9 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Clp1Q99LI9 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.35■□□□□ 0.85
Clp1Q99LI9 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
Clp1Q99LI9 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Clp1Q99LI9 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Clp1Q99LI9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clp1Q99LI9 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clp1Q99LI9 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clp1Q99LI9 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Clp1Q99LI9 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clp1Q99LI9 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Clp1Q99LI9 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.34■□□□□ 0.85
Clp1Q99LI9 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clp1Q99LI9 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clp1Q99LI9 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clp1Q99LI9 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Clp1Q99LI9 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Clp1Q99LI9 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Clp1Q99LI9 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Clp1Q99LI9 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Clp1Q99LI9 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC20.33■□□□□ 0.85
Clp1Q99LI9 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC20.33■□□□□ 0.85
Clp1Q99LI9 Gm2559-201ENSMUST00000201323 363 ntBASIC20.33■□□□□ 0.85
Clp1Q99LI9 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.33■□□□□ 0.84
Clp1Q99LI9 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Clp1Q99LI9 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Clp1Q99LI9 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Clp1Q99LI9 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Clp1Q99LI9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Dio3-201ENSMUST00000097228 1449 ntBASIC20.32■□□□□ 0.84
Clp1Q99LI9 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 114.5 ms