Protein–RNA interactions for Protein: Q80TE0

Rpap1, RNA polymerase II-associated protein 1, mousemouse

Predictions only

Length 1,409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap1Q80TE0 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.16■■■□□ 2.42
Rpap1Q80TE0 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Rpap1Q80TE0 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC30.15■■■□□ 2.42
Rpap1Q80TE0 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Rpap1Q80TE0 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Rpap1Q80TE0 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Rpap1Q80TE0 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Rpap1Q80TE0 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Rpap1Q80TE0 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
Rpap1Q80TE0 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC30.14■■■□□ 2.42
Rpap1Q80TE0 AC130671.1-201ENSMUST00000227384 1237 ntBASIC30.14■■■□□ 2.42
Rpap1Q80TE0 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Rpap1Q80TE0 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC30.14■■■□□ 2.42
Rpap1Q80TE0 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
Rpap1Q80TE0 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Rpap1Q80TE0 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Rpap1Q80TE0 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
Rpap1Q80TE0 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Rpap1Q80TE0 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
Rpap1Q80TE0 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC30.13■■■□□ 2.41
Rpap1Q80TE0 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC30.13■■■□□ 2.41
Rpap1Q80TE0 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Rpap1Q80TE0 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Rpap1Q80TE0 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Rpap1Q80TE0 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Rpap1Q80TE0 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC30.12■■■□□ 2.41
Rpap1Q80TE0 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Rpap1Q80TE0 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Rpap1Q80TE0 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC30.11■■■□□ 2.41
Rpap1Q80TE0 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
Rpap1Q80TE0 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Rpap1Q80TE0 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC30.11■■■□□ 2.41
Rpap1Q80TE0 Gm29994-201ENSMUST00000195495 1193 ntBASIC30.11■■■□□ 2.41
Rpap1Q80TE0 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Rpap1Q80TE0 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Rpap1Q80TE0 Gm13042-201ENSMUST00000119244 1955 ntBASIC30.11■■■□□ 2.41
Rpap1Q80TE0 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Rpap1Q80TE0 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Rpap1Q80TE0 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
Rpap1Q80TE0 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC30.1■■■□□ 2.41
Rpap1Q80TE0 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
Rpap1Q80TE0 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Rpap1Q80TE0 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
Rpap1Q80TE0 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Rpap1Q80TE0 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Rpap1Q80TE0 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Rpap1Q80TE0 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
Rpap1Q80TE0 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Rpap1Q80TE0 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
Rpap1Q80TE0 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
Rpap1Q80TE0 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Rpap1Q80TE0 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
Rpap1Q80TE0 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC30.08■■■□□ 2.41
Rpap1Q80TE0 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Rpap1Q80TE0 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC30.08■■■□□ 2.41
Rpap1Q80TE0 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Rpap1Q80TE0 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Rpap1Q80TE0 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
Rpap1Q80TE0 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Rpap1Q80TE0 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
Rpap1Q80TE0 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Rpap1Q80TE0 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Rpap1Q80TE0 Dio3-201ENSMUST00000097228 1449 ntBASIC30.07■■■□□ 2.4
Rpap1Q80TE0 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
Rpap1Q80TE0 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Rpap1Q80TE0 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Rpap1Q80TE0 Gm6802-201ENSMUST00000167843 1983 ntBASIC30.06■■■□□ 2.4
Rpap1Q80TE0 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Rpap1Q80TE0 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC30.06■■■□□ 2.4
Rpap1Q80TE0 Gm715-201ENSMUST00000117865 831 ntBASIC30.06■■■□□ 2.4
Rpap1Q80TE0 Gm6576-201ENSMUST00000169678 883 ntBASIC30.06■■■□□ 2.4
Rpap1Q80TE0 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Rpap1Q80TE0 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Rpap1Q80TE0 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
Rpap1Q80TE0 Gm2559-201ENSMUST00000201323 363 ntBASIC30.05■■■□□ 2.4
Rpap1Q80TE0 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Rpap1Q80TE0 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Rpap1Q80TE0 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Rpap1Q80TE0 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Rpap1Q80TE0 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Rpap1Q80TE0 Arhgef33-211ENSMUST00000225658 473 ntBASIC30.05■■■□□ 2.4
Rpap1Q80TE0 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC30.04■■■□□ 2.4
Rpap1Q80TE0 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Rpap1Q80TE0 Krtap5-1-202ENSMUST00000188274 742 ntBASIC30.04■■■□□ 2.4
Rpap1Q80TE0 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Rpap1Q80TE0 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
Rpap1Q80TE0 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Rpap1Q80TE0 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Rpap1Q80TE0 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Rpap1Q80TE0 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC30.03■■■□□ 2.4
Rpap1Q80TE0 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC30.02■■■□□ 2.4
Rpap1Q80TE0 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC30.02■■■□□ 2.4
Rpap1Q80TE0 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Rpap1Q80TE0 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC30.02■■■□□ 2.4
Rpap1Q80TE0 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Rpap1Q80TE0 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Rpap1Q80TE0 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC30.02■■■□□ 2.4
Rpap1Q80TE0 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Rpap1Q80TE0 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC30.02■■■□□ 2.4
Rpap1Q80TE0 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC30.01■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 82.7 ms