Protein–RNA interactions for Protein: A0A075B6B3

Trav6d-3, T cell receptor alpha variable 6D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-3A0A075B6B3 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav6d-3A0A075B6B3 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav6d-3A0A075B6B3 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Trav6d-3A0A075B6B3 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav6d-3A0A075B6B3 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav6d-3A0A075B6B3 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 BC021767-201ENSMUST00000126387 1716 ntBASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC15.4■□□□□ 0.06
Trav6d-3A0A075B6B3 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
Trav6d-3A0A075B6B3 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
Trav6d-3A0A075B6B3 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Gm5576-201ENSMUST00000075809 1236 ntBASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav6d-3A0A075B6B3 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6d-3A0A075B6B3 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Trav6d-3A0A075B6B3 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms