Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Clp1Q99LI9 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.49■□□□□ 0.87
Clp1Q99LI9 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Clp1Q99LI9 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
Clp1Q99LI9 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Clp1Q99LI9 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
Clp1Q99LI9 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.49■□□□□ 0.87
Clp1Q99LI9 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Clp1Q99LI9 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Clp1Q99LI9 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Clp1Q99LI9 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.49■□□□□ 0.87
Clp1Q99LI9 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Clp1Q99LI9 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Clp1Q99LI9 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Gm22325-201ENSMUST00000158904 308 ntBASIC20.47■□□□□ 0.87
Clp1Q99LI9 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Clp1Q99LI9 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clp1Q99LI9 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Clp1Q99LI9 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Clp1Q99LI9 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC20.46■□□□□ 0.87
Clp1Q99LI9 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Clp1Q99LI9 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clp1Q99LI9 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Clp1Q99LI9 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clp1Q99LI9 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clp1Q99LI9 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clp1Q99LI9 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clp1Q99LI9 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clp1Q99LI9 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clp1Q99LI9 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Clp1Q99LI9 Gm29241-201ENSMUST00000189260 1096 ntBASIC20.45■□□□□ 0.86
Clp1Q99LI9 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clp1Q99LI9 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.45■□□□□ 0.86
Clp1Q99LI9 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clp1Q99LI9 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
Clp1Q99LI9 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Clp1Q99LI9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.45■□□□□ 0.86
Clp1Q99LI9 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Gm27275-201ENSMUST00000184318 272 ntBASIC20.44■□□□□ 0.86
Clp1Q99LI9 Mir6982-201ENSMUST00000184354 68 ntBASIC20.44■□□□□ 0.86
Clp1Q99LI9 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Clp1Q99LI9 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.43■□□□□ 0.86
Clp1Q99LI9 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
Clp1Q99LI9 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Clp1Q99LI9 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Clp1Q99LI9 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Clp1Q99LI9 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC20.42■□□□□ 0.86
Clp1Q99LI9 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Clp1Q99LI9 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 88.4 ms