Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smco4Q9JIS3 Gm37811-201ENSMUST00000192416 2601 ntBASIC15.7■□□□□ 0.1
Smco4Q9JIS3 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smco4Q9JIS3 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC15.7■□□□□ 0.1
Smco4Q9JIS3 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smco4Q9JIS3 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smco4Q9JIS3 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smco4Q9JIS3 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smco4Q9JIS3 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smco4Q9JIS3 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smco4Q9JIS3 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
Smco4Q9JIS3 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
Smco4Q9JIS3 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smco4Q9JIS3 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Gm43909-201ENSMUST00000203443 1876 ntBASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Gm13889-201ENSMUST00000099689 1386 ntBASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smco4Q9JIS3 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smco4Q9JIS3 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Smco4Q9JIS3 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Smco4Q9JIS3 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Fst-202ENSMUST00000223640 2612 ntBASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Smco4Q9JIS3 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Gm4799-201ENSMUST00000095396 657 ntBASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC15.64■□□□□ 0.09
Smco4Q9JIS3 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 71.6 ms