Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trav6-3Q5R1E6 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trav6-3Q5R1E6 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC15.69■□□□□ 0.1
Trav6-3Q5R1E6 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trav6-3Q5R1E6 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trav6-3Q5R1E6 Gm9959-201ENSMUST00000068277 390 ntBASIC15.68■□□□□ 0.1
Trav6-3Q5R1E6 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trav6-3Q5R1E6 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trav6-3Q5R1E6 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trav6-3Q5R1E6 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Trav6-3Q5R1E6 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trav6-3Q5R1E6 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trav6-3Q5R1E6 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav6-3Q5R1E6 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
Trav6-3Q5R1E6 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Trav6-3Q5R1E6 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trav6-3Q5R1E6 Gm20100-201ENSMUST00000209418 2272 ntBASIC15.64■□□□□ 0.09
Trav6-3Q5R1E6 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trav6-3Q5R1E6 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trav6-3Q5R1E6 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trav6-3Q5R1E6 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trav6-3Q5R1E6 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trav6-3Q5R1E6 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Trav6-3Q5R1E6 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC15.61■□□□□ 0.09
Trav6-3Q5R1E6 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trav6-3Q5R1E6 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trav6-3Q5R1E6 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Trav6-3Q5R1E6 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trav6-3Q5R1E6 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trav6-3Q5R1E6 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trav6-3Q5R1E6 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 172.6 ms