Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim60Q8VI40 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim60Q8VI40 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim60Q8VI40 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim60Q8VI40 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.38■□□□□ 0.85
Trim60Q8VI40 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim60Q8VI40 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
Trim60Q8VI40 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.37■□□□□ 0.85
Trim60Q8VI40 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.37■□□□□ 0.85
Trim60Q8VI40 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.37■□□□□ 0.85
Trim60Q8VI40 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim60Q8VI40 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Trim60Q8VI40 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trim60Q8VI40 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trim60Q8VI40 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Trim60Q8VI40 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim60Q8VI40 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.36■□□□□ 0.85
Trim60Q8VI40 Gm7417-201ENSMUST00000192950 473 ntBASIC20.36■□□□□ 0.85
Trim60Q8VI40 Gm15820-201ENSMUST00000201566 728 ntBASIC20.36■□□□□ 0.85
Trim60Q8VI40 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.36■□□□□ 0.85
Trim60Q8VI40 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.36■□□□□ 0.85
Trim60Q8VI40 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim60Q8VI40 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Trim60Q8VI40 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim60Q8VI40 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim60Q8VI40 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim60Q8VI40 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.35■□□□□ 0.85
Trim60Q8VI40 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Trim60Q8VI40 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Trim60Q8VI40 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Trim60Q8VI40 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim60Q8VI40 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim60Q8VI40 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim60Q8VI40 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Etf1-202ENSMUST00000180351 108 ntBASIC20.34■□□□□ 0.85
Trim60Q8VI40 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Trim60Q8VI40 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim60Q8VI40 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim60Q8VI40 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim60Q8VI40 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim60Q8VI40 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim60Q8VI40 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim60Q8VI40 Iqck-206ENSMUST00000208658 2891 ntBASIC20.33■□□□□ 0.84
Trim60Q8VI40 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.33■□□□□ 0.84
Trim60Q8VI40 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Trim60Q8VI40 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim60Q8VI40 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim60Q8VI40 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim60Q8VI40 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim60Q8VI40 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.32■□□□□ 0.84
Trim60Q8VI40 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim60Q8VI40 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Trim60Q8VI40 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim60Q8VI40 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.31■□□□□ 0.84
Trim60Q8VI40 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.31■□□□□ 0.84
Trim60Q8VI40 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim60Q8VI40 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim60Q8VI40 Gm5522-201ENSMUST00000189483 1242 ntBASIC20.31■□□□□ 0.84
Trim60Q8VI40 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.31■□□□□ 0.84
Trim60Q8VI40 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim60Q8VI40 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim60Q8VI40 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim60Q8VI40 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim60Q8VI40 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim60Q8VI40 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim60Q8VI40 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
Trim60Q8VI40 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC20.3■□□□□ 0.84
Trim60Q8VI40 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim60Q8VI40 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim60Q8VI40 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.3■□□□□ 0.84
Trim60Q8VI40 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Trim60Q8VI40 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim60Q8VI40 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms