Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv1A0A0B4J1G7 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Gm43566-201ENSMUST00000196851 808 ntBASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv1A0A0B4J1G7 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 AC158990.1-201ENSMUST00000221450 2016 ntBASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Gm28536-201ENSMUST00000190971 1317 ntBASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Gm11847-201ENSMUST00000125165 1119 ntBASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv1A0A0B4J1G7 AC122428.2-201ENSMUST00000216321 1832 ntBASIC15.52■□□□□ 0.08
Trbv1A0A0B4J1G7 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv1A0A0B4J1G7 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv1A0A0B4J1G7 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv1A0A0B4J1G7 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv1A0A0B4J1G7 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv1A0A0B4J1G7 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv1A0A0B4J1G7 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv1A0A0B4J1G7 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC15.52■□□□□ 0.08
Trbv1A0A0B4J1G7 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Trbv1A0A0B4J1G7 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Trbv1A0A0B4J1G7 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trbv1A0A0B4J1G7 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trbv1A0A0B4J1G7 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv1A0A0B4J1G7 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv1A0A0B4J1G7 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv1A0A0B4J1G7 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv1A0A0B4J1G7 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv1A0A0B4J1G7 AC116713.1-201ENSMUST00000215074 430 ntBASIC15.51■□□□□ 0.07
Trbv1A0A0B4J1G7 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv1A0A0B4J1G7 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv1A0A0B4J1G7 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv1A0A0B4J1G7 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv1A0A0B4J1G7 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trbv1A0A0B4J1G7 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Golph3-205ENSMUST00000228671 2842 ntBASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC15.49■□□□□ 0.07
Trbv1A0A0B4J1G7 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms