Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Nsd1-203ENSMUST00000224156 1149 ntBASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Gm5921-201ENSMUST00000075898 882 ntBASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC15.62■□□□□ 0.09
Trbv1A0A0B4J1G7 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Gm45444-201ENSMUST00000211394 898 ntBASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Trbv1A0A0B4J1G7 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Trbv1A0A0B4J1G7 Gm37035-201ENSMUST00000194809 2148 ntBASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC15.59■□□□□ 0.09
Trbv1A0A0B4J1G7 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trbv1A0A0B4J1G7 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
Trbv1A0A0B4J1G7 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trbv1A0A0B4J1G7 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trbv1A0A0B4J1G7 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC15.58■□□□□ 0.08
Trbv1A0A0B4J1G7 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC15.58■□□□□ 0.08
Trbv1A0A0B4J1G7 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv1A0A0B4J1G7 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv1A0A0B4J1G7 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv1A0A0B4J1G7 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv1A0A0B4J1G7 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv1A0A0B4J1G7 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv1A0A0B4J1G7 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv1A0A0B4J1G7 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv1A0A0B4J1G7 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trbv1A0A0B4J1G7 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Trbv1A0A0B4J1G7 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms