Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Col7a1Q63870 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC23.49■■□□□ 1.35
Col7a1Q63870 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Col7a1Q63870 Gm8503-201ENSMUST00000118131 455 ntBASIC23.46■■□□□ 1.35
Col7a1Q63870 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Col7a1Q63870 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Col7a1Q63870 Peli2-204ENSMUST00000226513 1320 ntBASIC23.43■■□□□ 1.34
Col7a1Q63870 AL845457.1-201ENSMUST00000197244 68 ntBASIC23.4■■□□□ 1.34
Col7a1Q63870 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Col7a1Q63870 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC23.37■■□□□ 1.33
Col7a1Q63870 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Col7a1Q63870 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
Col7a1Q63870 Gm42596-201ENSMUST00000196305 1958 ntBASIC23.36■■□□□ 1.33
Col7a1Q63870 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC23.36■■□□□ 1.33
Col7a1Q63870 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Col7a1Q63870 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Col7a1Q63870 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col7a1Q63870 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC23.33■■□□□ 1.33
Col7a1Q63870 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC23.33■■□□□ 1.32
Col7a1Q63870 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col7a1Q63870 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC23.3■■□□□ 1.32
Col7a1Q63870 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC23.3■■□□□ 1.32
Col7a1Q63870 Gm10524-201ENSMUST00000181931 1893 ntBASIC23.29■■□□□ 1.32
Col7a1Q63870 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Col7a1Q63870 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Col7a1Q63870 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC23.22■■□□□ 1.31
Col7a1Q63870 Gm9939-201ENSMUST00000067161 1154 ntBASIC23.22■■□□□ 1.31
Col7a1Q63870 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Col7a1Q63870 Gm24970-201ENSMUST00000175582 82 ntBASIC23.19■■□□□ 1.3
Col7a1Q63870 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC23.17■■□□□ 1.3
Col7a1Q63870 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Col7a1Q63870 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23.16■■□□□ 1.3
Col7a1Q63870 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col7a1Q63870 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Col7a1Q63870 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Col7a1Q63870 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Col7a1Q63870 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Col7a1Q63870 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Col7a1Q63870 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC23.05■■□□□ 1.28
Col7a1Q63870 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
Col7a1Q63870 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
Col7a1Q63870 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Col7a1Q63870 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Col7a1Q63870 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Col7a1Q63870 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC23■■□□□ 1.27
Col7a1Q63870 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Col7a1Q63870 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC23■■□□□ 1.27
Col7a1Q63870 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC22.99■■□□□ 1.27
Col7a1Q63870 Gm6821-201ENSMUST00000107540 542 ntBASIC22.99■■□□□ 1.27
Col7a1Q63870 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Col7a1Q63870 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC22.98■■□□□ 1.27
Col7a1Q63870 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Col7a1Q63870 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Col7a1Q63870 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Col7a1Q63870 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC22.91■■□□□ 1.26
Col7a1Q63870 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Col7a1Q63870 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Col7a1Q63870 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC22.87■■□□□ 1.25
Col7a1Q63870 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Col7a1Q63870 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC22.86■■□□□ 1.25
Col7a1Q63870 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Col7a1Q63870 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
Col7a1Q63870 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
Col7a1Q63870 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Col7a1Q63870 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC22.8■■□□□ 1.24
Col7a1Q63870 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Col7a1Q63870 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Col7a1Q63870 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Col7a1Q63870 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC22.76■■□□□ 1.23
Col7a1Q63870 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Col7a1Q63870 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Col7a1Q63870 Zfp131-207ENSMUST00000224946 1783 ntBASIC22.74■■□□□ 1.23
Col7a1Q63870 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Col7a1Q63870 Mir6538-201ENSMUST00000183713 110 ntBASIC22.72■■□□□ 1.23
Col7a1Q63870 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Col7a1Q63870 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Col7a1Q63870 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Col7a1Q63870 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC22.69■■□□□ 1.22
Col7a1Q63870 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC22.69■■□□□ 1.22
Col7a1Q63870 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.68■■□□□ 1.22
Col7a1Q63870 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Col7a1Q63870 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC22.66■■□□□ 1.22
Col7a1Q63870 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Col7a1Q63870 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
Col7a1Q63870 Gm15039-201ENSMUST00000118914 875 ntBASIC22.62■■□□□ 1.21
Col7a1Q63870 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Col7a1Q63870 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Col7a1Q63870 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Col7a1Q63870 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Col7a1Q63870 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Col7a1Q63870 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Col7a1Q63870 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC22.54■■□□□ 1.2
Col7a1Q63870 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col7a1Q63870 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col7a1Q63870 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC22.53■■□□□ 1.2
Col7a1Q63870 Gm42809-201ENSMUST00000198429 1138 ntBASIC22.52■■□□□ 1.2
Col7a1Q63870 Gm7432-201ENSMUST00000210343 879 ntBASIC22.52■■□□□ 1.2
Col7a1Q63870 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col7a1Q63870 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col7a1Q63870 Gm11175-201ENSMUST00000116172 543 ntBASIC22.51■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 105.5 ms