Protein–RNA interactions for Protein: Q2QI47

Ush2A, Usherin, mousemouse

Predictions only

Length 5,193 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ush2AQ2QI47 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ush2AQ2QI47 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ush2AQ2QI47 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ush2AQ2QI47 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Ush2AQ2QI47 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC15.27■□□□□ 0.04
Ush2AQ2QI47 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC15.27■□□□□ 0.03
Ush2AQ2QI47 Gm9939-201ENSMUST00000067161 1154 ntBASIC15.26■□□□□ 0.03
Ush2AQ2QI47 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC15.25■□□□□ 0.03
Ush2AQ2QI47 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ush2AQ2QI47 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC15.23■□□□□ 0.03
Ush2AQ2QI47 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC15.22■□□□□ 0.03
Ush2AQ2QI47 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Ush2AQ2QI47 Peli2-204ENSMUST00000226513 1320 ntBASIC15.21■□□□□ 0.03
Ush2AQ2QI47 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Ush2AQ2QI47 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ush2AQ2QI47 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ush2AQ2QI47 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC15.18■□□□□ 0.02
Ush2AQ2QI47 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ush2AQ2QI47 Gm6821-201ENSMUST00000107540 542 ntBASIC15.16■□□□□ 0.02
Ush2AQ2QI47 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ush2AQ2QI47 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ush2AQ2QI47 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ush2AQ2QI47 AL845457.1-201ENSMUST00000197244 68 ntBASIC15.14■□□□□ 0.01
Ush2AQ2QI47 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC15.12■□□□□ 0.01
Ush2AQ2QI47 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC15.11■□□□□ 0.01
Ush2AQ2QI47 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ush2AQ2QI47 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ush2AQ2QI47 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ush2AQ2QI47 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ush2AQ2QI47 Mir6538-201ENSMUST00000183713 110 ntBASIC15.07■□□□□ 0
Ush2AQ2QI47 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ush2AQ2QI47 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ush2AQ2QI47 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ush2AQ2QI47 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC15.05■□□□□ -0
Ush2AQ2QI47 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ush2AQ2QI47 Gm24970-201ENSMUST00000175582 82 ntBASIC15.04■□□□□ -0
Ush2AQ2QI47 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ush2AQ2QI47 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Ush2AQ2QI47 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC15.02□□□□□ -0.01
Ush2AQ2QI47 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC15.01□□□□□ -0.01
Ush2AQ2QI47 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ush2AQ2QI47 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ush2AQ2QI47 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC15□□□□□ -0.01
Ush2AQ2QI47 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ush2AQ2QI47 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Ush2AQ2QI47 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC14.99□□□□□ -0.01
Ush2AQ2QI47 Gm11175-201ENSMUST00000116172 543 ntBASIC14.99□□□□□ -0.01
Ush2AQ2QI47 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ush2AQ2QI47 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC14.96□□□□□ -0.01
Ush2AQ2QI47 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Ush2AQ2QI47 Cap2-205ENSMUST00000225824 1634 ntBASIC14.96□□□□□ -0.01
Ush2AQ2QI47 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ush2AQ2QI47 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC14.94□□□□□ -0.02
Ush2AQ2QI47 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC14.93□□□□□ -0.02
Ush2AQ2QI47 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Ush2AQ2QI47 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ush2AQ2QI47 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ush2AQ2QI47 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ush2AQ2QI47 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC14.87□□□□□ -0.03
Ush2AQ2QI47 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Ush2AQ2QI47 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ush2AQ2QI47 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC14.85□□□□□ -0.03
Ush2AQ2QI47 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ush2AQ2QI47 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC14.84□□□□□ -0.03
Ush2AQ2QI47 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ush2AQ2QI47 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ush2AQ2QI47 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ush2AQ2QI47 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ush2AQ2QI47 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ush2AQ2QI47 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Ush2AQ2QI47 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Ush2AQ2QI47 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC14.8□□□□□ -0.04
Ush2AQ2QI47 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ush2AQ2QI47 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ush2AQ2QI47 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ush2AQ2QI47 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ush2AQ2QI47 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC14.76□□□□□ -0.05
Ush2AQ2QI47 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Ush2AQ2QI47 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ush2AQ2QI47 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC14.74□□□□□ -0.05
Ush2AQ2QI47 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Ush2AQ2QI47 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Ush2AQ2QI47 Gm42809-201ENSMUST00000198429 1138 ntBASIC14.73□□□□□ -0.05
Ush2AQ2QI47 Gm10524-201ENSMUST00000181931 1893 ntBASIC14.72□□□□□ -0.05
Ush2AQ2QI47 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ush2AQ2QI47 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ush2AQ2QI47 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ush2AQ2QI47 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC14.71□□□□□ -0.05
Ush2AQ2QI47 Gm7432-201ENSMUST00000210343 879 ntBASIC14.71□□□□□ -0.05
Ush2AQ2QI47 Psd-208ENSMUST00000224556 2034 ntBASIC14.7□□□□□ -0.06
Ush2AQ2QI47 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ush2AQ2QI47 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC14.7□□□□□ -0.06
Ush2AQ2QI47 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ush2AQ2QI47 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ush2AQ2QI47 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ush2AQ2QI47 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ush2AQ2QI47 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ush2AQ2QI47 Gm42596-201ENSMUST00000196305 1958 ntBASIC14.66□□□□□ -0.06
Ush2AQ2QI47 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC14.66□□□□□ -0.06
Ush2AQ2QI47 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms