Protein–RNA interactions for Protein: A0A0B4J1P1

Trbv30, T cell receptor beta, variable 30 (Fragment), mousemouse

Predictions only

Length 111 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv30A0A0B4J1P1 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv30A0A0B4J1P1 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trbv30A0A0B4J1P1 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Trbv30A0A0B4J1P1 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trbv30A0A0B4J1P1 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC19.58■□□□□ 0.72
Trbv30A0A0B4J1P1 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC19.57■□□□□ 0.72
Trbv30A0A0B4J1P1 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trbv30A0A0B4J1P1 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trbv30A0A0B4J1P1 Gm24804-201ENSMUST00000174982 85 ntBASIC19.53■□□□□ 0.72
Trbv30A0A0B4J1P1 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trbv30A0A0B4J1P1 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv30A0A0B4J1P1 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv30A0A0B4J1P1 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Trbv30A0A0B4J1P1 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv30A0A0B4J1P1 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv30A0A0B4J1P1 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Trbv30A0A0B4J1P1 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv30A0A0B4J1P1 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv30A0A0B4J1P1 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.49■□□□□ 0.71
Trbv30A0A0B4J1P1 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trbv30A0A0B4J1P1 Gm2415-204ENSMUST00000190235 2004 ntBASIC19.46■□□□□ 0.71
Trbv30A0A0B4J1P1 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Trbv30A0A0B4J1P1 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trbv30A0A0B4J1P1 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC19.43■□□□□ 0.7
Trbv30A0A0B4J1P1 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trbv30A0A0B4J1P1 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trbv30A0A0B4J1P1 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trbv30A0A0B4J1P1 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trbv30A0A0B4J1P1 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trbv30A0A0B4J1P1 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trbv30A0A0B4J1P1 Peli2-204ENSMUST00000226513 1320 ntBASIC19.4■□□□□ 0.7
Trbv30A0A0B4J1P1 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trbv30A0A0B4J1P1 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
Trbv30A0A0B4J1P1 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trbv30A0A0B4J1P1 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trbv30A0A0B4J1P1 Gm6658-202ENSMUST00000209493 1885 ntBASIC19.36■□□□□ 0.69
Trbv30A0A0B4J1P1 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trbv30A0A0B4J1P1 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trbv30A0A0B4J1P1 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trbv30A0A0B4J1P1 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trbv30A0A0B4J1P1 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Trbv30A0A0B4J1P1 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv30A0A0B4J1P1 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv30A0A0B4J1P1 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Trbv30A0A0B4J1P1 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv30A0A0B4J1P1 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC19.31■□□□□ 0.68
Trbv30A0A0B4J1P1 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv30A0A0B4J1P1 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv30A0A0B4J1P1 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.3■□□□□ 0.68
Trbv30A0A0B4J1P1 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv30A0A0B4J1P1 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trbv30A0A0B4J1P1 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Trbv30A0A0B4J1P1 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv30A0A0B4J1P1 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.25■□□□□ 0.67
Trbv30A0A0B4J1P1 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trbv30A0A0B4J1P1 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.23■□□□□ 0.67
Trbv30A0A0B4J1P1 Gm16148-201ENSMUST00000119653 893 ntBASIC19.23■□□□□ 0.67
Trbv30A0A0B4J1P1 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trbv30A0A0B4J1P1 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Trbv30A0A0B4J1P1 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv30A0A0B4J1P1 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.66
Trbv30A0A0B4J1P1 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv30A0A0B4J1P1 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv30A0A0B4J1P1 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv30A0A0B4J1P1 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv30A0A0B4J1P1 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv30A0A0B4J1P1 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trbv30A0A0B4J1P1 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trbv30A0A0B4J1P1 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trbv30A0A0B4J1P1 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trbv30A0A0B4J1P1 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trbv30A0A0B4J1P1 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.66
Trbv30A0A0B4J1P1 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Trbv30A0A0B4J1P1 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC19.13■□□□□ 0.65
Trbv30A0A0B4J1P1 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv30A0A0B4J1P1 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv30A0A0B4J1P1 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC19.09■□□□□ 0.65
Trbv30A0A0B4J1P1 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv30A0A0B4J1P1 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv30A0A0B4J1P1 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
Trbv30A0A0B4J1P1 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trbv30A0A0B4J1P1 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trbv30A0A0B4J1P1 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Trbv30A0A0B4J1P1 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trbv30A0A0B4J1P1 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC19.05■□□□□ 0.64
Trbv30A0A0B4J1P1 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv30A0A0B4J1P1 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trbv30A0A0B4J1P1 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trbv30A0A0B4J1P1 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trbv30A0A0B4J1P1 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv30A0A0B4J1P1 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.03■□□□□ 0.64
Trbv30A0A0B4J1P1 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv30A0A0B4J1P1 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv30A0A0B4J1P1 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 77.7 ms