Protein–RNA interactions for Protein: A0A075B6B4

Trav6-4, T cell receptor alpha variable 6-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-4A0A075B6B4 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trav6-4A0A075B6B4 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.09■□□□□ 0.81
Trav6-4A0A075B6B4 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav6-4A0A075B6B4 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trav6-4A0A075B6B4 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav6-4A0A075B6B4 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav6-4A0A075B6B4 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav6-4A0A075B6B4 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav6-4A0A075B6B4 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Trav6-4A0A075B6B4 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
Trav6-4A0A075B6B4 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Trav6-4A0A075B6B4 Gm2415-204ENSMUST00000190235 2004 ntBASIC20.03■□□□□ 0.8
Trav6-4A0A075B6B4 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav6-4A0A075B6B4 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav6-4A0A075B6B4 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6-4A0A075B6B4 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6-4A0A075B6B4 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC19.99■□□□□ 0.79
Trav6-4A0A075B6B4 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6-4A0A075B6B4 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trav6-4A0A075B6B4 Gm24804-201ENSMUST00000174982 85 ntBASIC19.93■□□□□ 0.78
Trav6-4A0A075B6B4 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Trav6-4A0A075B6B4 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trav6-4A0A075B6B4 Gm6658-202ENSMUST00000209493 1885 ntBASIC19.92■□□□□ 0.78
Trav6-4A0A075B6B4 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Trav6-4A0A075B6B4 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trav6-4A0A075B6B4 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trav6-4A0A075B6B4 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trav6-4A0A075B6B4 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trav6-4A0A075B6B4 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trav6-4A0A075B6B4 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trav6-4A0A075B6B4 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC19.88■□□□□ 0.77
Trav6-4A0A075B6B4 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trav6-4A0A075B6B4 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
Trav6-4A0A075B6B4 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav6-4A0A075B6B4 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav6-4A0A075B6B4 Peli2-204ENSMUST00000226513 1320 ntBASIC19.84■□□□□ 0.77
Trav6-4A0A075B6B4 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trav6-4A0A075B6B4 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trav6-4A0A075B6B4 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trav6-4A0A075B6B4 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trav6-4A0A075B6B4 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trav6-4A0A075B6B4 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trav6-4A0A075B6B4 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav6-4A0A075B6B4 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav6-4A0A075B6B4 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Trav6-4A0A075B6B4 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trav6-4A0A075B6B4 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.77■□□□□ 0.76
Trav6-4A0A075B6B4 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC19.77■□□□□ 0.76
Trav6-4A0A075B6B4 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Trav6-4A0A075B6B4 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav6-4A0A075B6B4 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Trav6-4A0A075B6B4 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav6-4A0A075B6B4 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trav6-4A0A075B6B4 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav6-4A0A075B6B4 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trav6-4A0A075B6B4 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trav6-4A0A075B6B4 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Trav6-4A0A075B6B4 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav6-4A0A075B6B4 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.7■□□□□ 0.74
Trav6-4A0A075B6B4 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Trav6-4A0A075B6B4 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav6-4A0A075B6B4 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav6-4A0A075B6B4 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav6-4A0A075B6B4 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trav6-4A0A075B6B4 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav6-4A0A075B6B4 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.65■□□□□ 0.74
Trav6-4A0A075B6B4 Gm16148-201ENSMUST00000119653 893 ntBASIC19.65■□□□□ 0.74
Trav6-4A0A075B6B4 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav6-4A0A075B6B4 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trav6-4A0A075B6B4 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
Trav6-4A0A075B6B4 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trav6-4A0A075B6B4 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC19.62■□□□□ 0.73
Trav6-4A0A075B6B4 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav6-4A0A075B6B4 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Trav6-4A0A075B6B4 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trav6-4A0A075B6B4 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav6-4A0A075B6B4 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav6-4A0A075B6B4 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trav6-4A0A075B6B4 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav6-4A0A075B6B4 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.73
Trav6-4A0A075B6B4 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trav6-4A0A075B6B4 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav6-4A0A075B6B4 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trav6-4A0A075B6B4 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trav6-4A0A075B6B4 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trav6-4A0A075B6B4 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav6-4A0A075B6B4 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trav6-4A0A075B6B4 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.55■□□□□ 0.72
Trav6-4A0A075B6B4 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC19.55■□□□□ 0.72
Trav6-4A0A075B6B4 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav6-4A0A075B6B4 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trav6-4A0A075B6B4 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC19.54■□□□□ 0.72
Trav6-4A0A075B6B4 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav6-4A0A075B6B4 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav6-4A0A075B6B4 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Trav6-4A0A075B6B4 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trav6-4A0A075B6B4 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav6-4A0A075B6B4 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav6-4A0A075B6B4 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav6-4A0A075B6B4 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms