Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trbv1A0A0B4J1G7 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Trbv1A0A0B4J1G7 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC15.7■□□□□ 0.1
Trbv1A0A0B4J1G7 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trbv1A0A0B4J1G7 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trbv1A0A0B4J1G7 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv1A0A0B4J1G7 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv1A0A0B4J1G7 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC15.69■□□□□ 0.1
Trbv1A0A0B4J1G7 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC15.69■□□□□ 0.1
Trbv1A0A0B4J1G7 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv1A0A0B4J1G7 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv1A0A0B4J1G7 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv1A0A0B4J1G7 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv1A0A0B4J1G7 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv1A0A0B4J1G7 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv1A0A0B4J1G7 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Trbv1A0A0B4J1G7 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv1A0A0B4J1G7 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv1A0A0B4J1G7 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Nsd1-206ENSMUST00000224918 1001 ntBASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv1A0A0B4J1G7 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv1A0A0B4J1G7 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv1A0A0B4J1G7 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv1A0A0B4J1G7 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv1A0A0B4J1G7 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv1A0A0B4J1G7 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv1A0A0B4J1G7 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Trbv1A0A0B4J1G7 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv1A0A0B4J1G7 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv1A0A0B4J1G7 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv1A0A0B4J1G7 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms