Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Gm5786-201ENSMUST00000085368 882 ntBASIC16.19■□□□□ 0.18
Trav6-1A0A075B5Z8 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Trav6-1A0A075B5Z8 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6-1A0A075B5Z8 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6-1A0A075B5Z8 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6-1A0A075B5Z8 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6-1A0A075B5Z8 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6-1A0A075B5Z8 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6-1A0A075B5Z8 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Gm43909-201ENSMUST00000203443 1876 ntBASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 AC166356.1-201ENSMUST00000228236 1426 ntBASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav6-1A0A075B5Z8 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6-1A0A075B5Z8 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6-1A0A075B5Z8 Hsf1-204ENSMUST00000226872 2104 ntBASIC16.16■□□□□ 0.18
Trav6-1A0A075B5Z8 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6-1A0A075B5Z8 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6-1A0A075B5Z8 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6-1A0A075B5Z8 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC16.16■□□□□ 0.18
Trav6-1A0A075B5Z8 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6-1A0A075B5Z8 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6-1A0A075B5Z8 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6-1A0A075B5Z8 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6-1A0A075B5Z8 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 Gm10620-201ENSMUST00000098379 1332 ntBASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC16.14■□□□□ 0.17
Trav6-1A0A075B5Z8 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6-1A0A075B5Z8 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Gm16464-201ENSMUST00000117815 1095 ntBASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6-1A0A075B5Z8 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6-1A0A075B5Z8 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6-1A0A075B5Z8 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6-1A0A075B5Z8 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6-1A0A075B5Z8 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6-1A0A075B5Z8 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC16.11■□□□□ 0.17
Trav6-1A0A075B5Z8 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6-1A0A075B5Z8 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6-1A0A075B5Z8 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6-1A0A075B5Z8 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Trav6-1A0A075B5Z8 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms