Protein–RNA interactions for Protein: Q8CDD9

Lrif1, Ligand-dependent nuclear receptor-interacting factor 1, mousemouse

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lrif1Q8CDD9 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lrif1Q8CDD9 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
Lrif1Q8CDD9 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Lrif1Q8CDD9 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lrif1Q8CDD9 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lrif1Q8CDD9 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Lrif1Q8CDD9 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lrif1Q8CDD9 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lrif1Q8CDD9 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lrif1Q8CDD9 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Lrif1Q8CDD9 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lrif1Q8CDD9 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lrif1Q8CDD9 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.95■□□□□ 0.78
Lrif1Q8CDD9 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Lrif1Q8CDD9 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Lrif1Q8CDD9 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lrif1Q8CDD9 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lrif1Q8CDD9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.94■□□□□ 0.78
Lrif1Q8CDD9 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lrif1Q8CDD9 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lrif1Q8CDD9 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lrif1Q8CDD9 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lrif1Q8CDD9 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Lrif1Q8CDD9 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lrif1Q8CDD9 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lrif1Q8CDD9 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lrif1Q8CDD9 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lrif1Q8CDD9 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lrif1Q8CDD9 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Lrif1Q8CDD9 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Lrif1Q8CDD9 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Lrif1Q8CDD9 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Lrif1Q8CDD9 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Lrif1Q8CDD9 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Lrif1Q8CDD9 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Lrif1Q8CDD9 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Lrif1Q8CDD9 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Lrif1Q8CDD9 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Lrif1Q8CDD9 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Lrif1Q8CDD9 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Lrif1Q8CDD9 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lrif1Q8CDD9 Gm13238-201ENSMUST00000117655 780 ntBASIC19.9■□□□□ 0.78
Lrif1Q8CDD9 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lrif1Q8CDD9 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lrif1Q8CDD9 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lrif1Q8CDD9 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lrif1Q8CDD9 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Lrif1Q8CDD9 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
Lrif1Q8CDD9 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lrif1Q8CDD9 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lrif1Q8CDD9 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Lrif1Q8CDD9 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.89■□□□□ 0.77
Lrif1Q8CDD9 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Lrif1Q8CDD9 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Lrif1Q8CDD9 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.89■□□□□ 0.77
Lrif1Q8CDD9 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lrif1Q8CDD9 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lrif1Q8CDD9 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lrif1Q8CDD9 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.88■□□□□ 0.77
Lrif1Q8CDD9 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Lrif1Q8CDD9 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lrif1Q8CDD9 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lrif1Q8CDD9 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lrif1Q8CDD9 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lrif1Q8CDD9 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Lrif1Q8CDD9 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lrif1Q8CDD9 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.88■□□□□ 0.77
Lrif1Q8CDD9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Lrif1Q8CDD9 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lrif1Q8CDD9 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.87■□□□□ 0.77
Lrif1Q8CDD9 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lrif1Q8CDD9 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lrif1Q8CDD9 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lrif1Q8CDD9 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.87■□□□□ 0.77
Lrif1Q8CDD9 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.87■□□□□ 0.77
Lrif1Q8CDD9 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Lrif1Q8CDD9 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lrif1Q8CDD9 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms