Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx28Q9CWT6 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Ddx28Q9CWT6 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx28Q9CWT6 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx28Q9CWT6 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Ddx28Q9CWT6 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx28Q9CWT6 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Ddx28Q9CWT6 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx28Q9CWT6 Gm13238-201ENSMUST00000117655 780 ntBASIC18.84■□□□□ 0.61
Ddx28Q9CWT6 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.84■□□□□ 0.61
Ddx28Q9CWT6 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx28Q9CWT6 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx28Q9CWT6 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx28Q9CWT6 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx28Q9CWT6 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddx28Q9CWT6 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddx28Q9CWT6 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx28Q9CWT6 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Ddx28Q9CWT6 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx28Q9CWT6 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx28Q9CWT6 Golph3-202ENSMUST00000226517 2359 ntBASIC18.83■□□□□ 0.6
Ddx28Q9CWT6 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx28Q9CWT6 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx28Q9CWT6 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
Ddx28Q9CWT6 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx28Q9CWT6 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC18.81■□□□□ 0.6
Ddx28Q9CWT6 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx28Q9CWT6 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx28Q9CWT6 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx28Q9CWT6 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx28Q9CWT6 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC18.79■□□□□ 0.6
Ddx28Q9CWT6 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx28Q9CWT6 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Ddx28Q9CWT6 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx28Q9CWT6 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.79■□□□□ 0.6
Ddx28Q9CWT6 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx28Q9CWT6 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx28Q9CWT6 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx28Q9CWT6 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx28Q9CWT6 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC18.78■□□□□ 0.6
Ddx28Q9CWT6 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx28Q9CWT6 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx28Q9CWT6 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Ddx28Q9CWT6 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx28Q9CWT6 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx28Q9CWT6 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx28Q9CWT6 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Ddx28Q9CWT6 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx28Q9CWT6 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx28Q9CWT6 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx28Q9CWT6 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ddx28Q9CWT6 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx28Q9CWT6 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx28Q9CWT6 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx28Q9CWT6 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx28Q9CWT6 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx28Q9CWT6 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC18.76■□□□□ 0.59
Ddx28Q9CWT6 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 69.9 ms