Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
Col17a1Q07563 Trmt13-210ENSMUST00000198454 880 ntBASIC32.44■■■□□ 2.78
Col17a1Q07563 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
Col17a1Q07563 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
Col17a1Q07563 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC32.43■■■□□ 2.78
Col17a1Q07563 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC32.43■■■□□ 2.78
Col17a1Q07563 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Col17a1Q07563 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Col17a1Q07563 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC32.43■■■□□ 2.78
Col17a1Q07563 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
Col17a1Q07563 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Col17a1Q07563 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC32.42■■■□□ 2.78
Col17a1Q07563 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
Col17a1Q07563 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Col17a1Q07563 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
Col17a1Q07563 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
Col17a1Q07563 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC32.41■■■□□ 2.78
Col17a1Q07563 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
Col17a1Q07563 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Col17a1Q07563 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC32.4■■■□□ 2.78
Col17a1Q07563 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC32.4■■■□□ 2.78
Col17a1Q07563 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC32.4■■■□□ 2.78
Col17a1Q07563 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC32.4■■■□□ 2.78
Col17a1Q07563 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC32.4■■■□□ 2.78
Col17a1Q07563 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC32.4■■■□□ 2.78
Col17a1Q07563 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC32.4■■■□□ 2.78
Col17a1Q07563 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Col17a1Q07563 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Col17a1Q07563 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC32.39■■■□□ 2.78
Col17a1Q07563 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC32.39■■■□□ 2.77
Col17a1Q07563 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC32.38■■■□□ 2.77
Col17a1Q07563 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC32.37■■■□□ 2.77
Col17a1Q07563 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC32.37■■■□□ 2.77
Col17a1Q07563 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC32.37■■■□□ 2.77
Col17a1Q07563 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC32.37■■■□□ 2.77
Col17a1Q07563 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
Col17a1Q07563 Gm10819-201ENSMUST00000099988 561 ntBASIC32.37■■■□□ 2.77
Col17a1Q07563 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
Col17a1Q07563 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
Col17a1Q07563 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Col17a1Q07563 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC32.36■■■□□ 2.77
Col17a1Q07563 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC32.36■■■□□ 2.77
Col17a1Q07563 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
Col17a1Q07563 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Col17a1Q07563 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
Col17a1Q07563 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Col17a1Q07563 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
Col17a1Q07563 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Col17a1Q07563 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Col17a1Q07563 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
Col17a1Q07563 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
Col17a1Q07563 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC32.34■■■□□ 2.77
Col17a1Q07563 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
Col17a1Q07563 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC32.34■■■□□ 2.77
Col17a1Q07563 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC32.33■■■□□ 2.77
Col17a1Q07563 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC32.33■■■□□ 2.77
Col17a1Q07563 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
Col17a1Q07563 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.77
Col17a1Q07563 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC32.32■■■□□ 2.76
Col17a1Q07563 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC32.32■■■□□ 2.76
Col17a1Q07563 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC32.32■■■□□ 2.76
Col17a1Q07563 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
Col17a1Q07563 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
Col17a1Q07563 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC32.31■■■□□ 2.76
Col17a1Q07563 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Col17a1Q07563 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
Col17a1Q07563 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
Col17a1Q07563 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC32.3■■■□□ 2.76
Col17a1Q07563 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC32.3■■■□□ 2.76
Col17a1Q07563 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
Col17a1Q07563 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC32.29■■■□□ 2.76
Col17a1Q07563 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Col17a1Q07563 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.76
Col17a1Q07563 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Col17a1Q07563 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC32.29■■■□□ 2.76
Col17a1Q07563 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC32.29■■■□□ 2.76
Col17a1Q07563 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC32.28■■■□□ 2.76
Col17a1Q07563 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Col17a1Q07563 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Col17a1Q07563 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC32.28■■■□□ 2.76
Col17a1Q07563 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
Col17a1Q07563 Gm7290-201ENSMUST00000104990 617 ntBASIC32.27■■■□□ 2.76
Col17a1Q07563 Gm12918-201ENSMUST00000120234 636 ntBASIC32.27■■■□□ 2.76
Col17a1Q07563 Gm15710-201ENSMUST00000121821 636 ntBASIC32.27■■■□□ 2.76
Col17a1Q07563 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC32.27■■■□□ 2.76
Col17a1Q07563 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC32.27■■■□□ 2.76
Col17a1Q07563 Gm5075-201ENSMUST00000196916 622 ntBASIC32.27■■■□□ 2.76
Col17a1Q07563 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
Col17a1Q07563 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC32.27■■■□□ 2.76
Col17a1Q07563 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC32.27■■■□□ 2.76
Col17a1Q07563 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC32.26■■■□□ 2.76
Col17a1Q07563 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC32.26■■■□□ 2.76
Col17a1Q07563 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Col17a1Q07563 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Col17a1Q07563 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Col17a1Q07563 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC32.26■■■□□ 2.75
Col17a1Q07563 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Col17a1Q07563 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC32.25■■■□□ 2.75
Col17a1Q07563 Gm715-201ENSMUST00000117865 831 ntBASIC32.25■■■□□ 2.75
Col17a1Q07563 Gm15565-201ENSMUST00000118890 427 ntBASIC32.25■■■□□ 2.75
Retrieved 100 of 76,532 protein–RNA pairs in 94.9 ms