Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Shkbp1Q6P7W2 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.49■■□□□ 1.03
Shkbp1Q6P7W2 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
Shkbp1Q6P7W2 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Shkbp1Q6P7W2 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
Shkbp1Q6P7W2 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Shkbp1Q6P7W2 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Shkbp1Q6P7W2 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Shkbp1Q6P7W2 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Shkbp1Q6P7W2 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.48■■□□□ 1.03
Shkbp1Q6P7W2 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Shkbp1Q6P7W2 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Shkbp1Q6P7W2 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Shkbp1Q6P7W2 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Shkbp1Q6P7W2 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Shkbp1Q6P7W2 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Shkbp1Q6P7W2 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Shkbp1Q6P7W2 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Shkbp1Q6P7W2 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Shkbp1Q6P7W2 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Shkbp1Q6P7W2 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.45■■□□□ 1.03
Shkbp1Q6P7W2 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Shkbp1Q6P7W2 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Shkbp1Q6P7W2 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Shkbp1Q6P7W2 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Shkbp1Q6P7W2 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Shkbp1Q6P7W2 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Shkbp1Q6P7W2 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Shkbp1Q6P7W2 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Shkbp1Q6P7W2 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Shkbp1Q6P7W2 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Shkbp1Q6P7W2 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
Shkbp1Q6P7W2 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Shkbp1Q6P7W2 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Shkbp1Q6P7W2 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Shkbp1Q6P7W2 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Shkbp1Q6P7W2 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Shkbp1Q6P7W2 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC21.43■■□□□ 1.02
Shkbp1Q6P7W2 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.43■■□□□ 1.02
Shkbp1Q6P7W2 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Shkbp1Q6P7W2 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Shkbp1Q6P7W2 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Shkbp1Q6P7W2 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Shkbp1Q6P7W2 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC21.42■■□□□ 1.02
Shkbp1Q6P7W2 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Shkbp1Q6P7W2 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.42■■□□□ 1.02
Shkbp1Q6P7W2 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Shkbp1Q6P7W2 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC21.42■■□□□ 1.02
Shkbp1Q6P7W2 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.42■■□□□ 1.02
Shkbp1Q6P7W2 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Shkbp1Q6P7W2 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Shkbp1Q6P7W2 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Shkbp1Q6P7W2 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Shkbp1Q6P7W2 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Shkbp1Q6P7W2 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Shkbp1Q6P7W2 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC21.41■■□□□ 1.02
Shkbp1Q6P7W2 Cdc34b-202ENSMUST00000188741 1252 ntBASIC21.41■■□□□ 1.02
Shkbp1Q6P7W2 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Shkbp1Q6P7W2 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Shkbp1Q6P7W2 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Shkbp1Q6P7W2 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Shkbp1Q6P7W2 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.4■■□□□ 1.02
Shkbp1Q6P7W2 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Shkbp1Q6P7W2 Gm26833-201ENSMUST00000180899 440 ntBASIC21.4■■□□□ 1.02
Shkbp1Q6P7W2 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.4■■□□□ 1.02
Shkbp1Q6P7W2 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Shkbp1Q6P7W2 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Shkbp1Q6P7W2 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC21.39■■□□□ 1.01
Shkbp1Q6P7W2 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Shkbp1Q6P7W2 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Shkbp1Q6P7W2 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Shkbp1Q6P7W2 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Shkbp1Q6P7W2 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Shkbp1Q6P7W2 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shkbp1Q6P7W2 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.38■■□□□ 1.01
Shkbp1Q6P7W2 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Shkbp1Q6P7W2 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Shkbp1Q6P7W2 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Shkbp1Q6P7W2 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shkbp1Q6P7W2 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.38■■□□□ 1.01
Shkbp1Q6P7W2 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shkbp1Q6P7W2 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shkbp1Q6P7W2 Gm5913-201ENSMUST00000119397 1399 ntBASIC21.37■■□□□ 1.01
Shkbp1Q6P7W2 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Shkbp1Q6P7W2 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Shkbp1Q6P7W2 Gm5874-201ENSMUST00000096101 508 ntBASIC21.37■■□□□ 1.01
Shkbp1Q6P7W2 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 84.9 ms