Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC15.78■□□□□ 0.12
Col6a5A6H584 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC15.78■□□□□ 0.12
Col6a5A6H584 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC15.78■□□□□ 0.12
Col6a5A6H584 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC15.77■□□□□ 0.12
Col6a5A6H584 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col6a5A6H584 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col6a5A6H584 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col6a5A6H584 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC15.77■□□□□ 0.12
Col6a5A6H584 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
Col6a5A6H584 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col6a5A6H584 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Col6a5A6H584 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Col6a5A6H584 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Col6a5A6H584 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col6a5A6H584 Gm3807-201ENSMUST00000193520 1168 ntBASIC15.77■□□□□ 0.11
Col6a5A6H584 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col6a5A6H584 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col6a5A6H584 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col6a5A6H584 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col6a5A6H584 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col6a5A6H584 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col6a5A6H584 Gm43859-201ENSMUST00000200075 1412 ntBASIC15.76■□□□□ 0.11
Col6a5A6H584 Reep4-203ENSMUST00000226563 1444 ntBASIC15.76■□□□□ 0.11
Col6a5A6H584 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Col6a5A6H584 Gm10812-201ENSMUST00000099864 546 ntBASIC15.76■□□□□ 0.11
Col6a5A6H584 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Col6a5A6H584 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col6a5A6H584 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC15.75■□□□□ 0.11
Col6a5A6H584 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Col6a5A6H584 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col6a5A6H584 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col6a5A6H584 Gm11421-201ENSMUST00000122124 294 ntBASIC15.75■□□□□ 0.11
Col6a5A6H584 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col6a5A6H584 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC15.75■□□□□ 0.11
Col6a5A6H584 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col6a5A6H584 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a5A6H584 Gm42555-201ENSMUST00000199304 1039 ntBASIC15.74■□□□□ 0.11
Col6a5A6H584 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a5A6H584 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a5A6H584 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a5A6H584 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a5A6H584 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC15.74■□□□□ 0.11
Col6a5A6H584 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a5A6H584 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a5A6H584 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a5A6H584 Gm715-201ENSMUST00000117865 831 ntBASIC15.73■□□□□ 0.11
Col6a5A6H584 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC15.73■□□□□ 0.11
Col6a5A6H584 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a5A6H584 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a5A6H584 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a5A6H584 Gm13234-201ENSMUST00000120010 747 ntBASIC15.73■□□□□ 0.11
Col6a5A6H584 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col6a5A6H584 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a5A6H584 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a5A6H584 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a5A6H584 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a5A6H584 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Col6a5A6H584 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Col6a5A6H584 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a5A6H584 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC15.72■□□□□ 0.11
Col6a5A6H584 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC15.72■□□□□ 0.11
Col6a5A6H584 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a5A6H584 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a5A6H584 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a5A6H584 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a5A6H584 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a5A6H584 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC15.71■□□□□ 0.11
Col6a5A6H584 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a5A6H584 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Col6a5A6H584 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a5A6H584 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC15.71■□□□□ 0.11
Col6a5A6H584 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a5A6H584 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Col6a5A6H584 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a5A6H584 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a5A6H584 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a5A6H584 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a5A6H584 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a5A6H584 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a5A6H584 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a5A6H584 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a5A6H584 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a5A6H584 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC15.7■□□□□ 0.1
Col6a5A6H584 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC15.7■□□□□ 0.1
Col6a5A6H584 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a5A6H584 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Col6a5A6H584 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Col6a5A6H584 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC15.69■□□□□ 0.1
Col6a5A6H584 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Col6a5A6H584 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a5A6H584 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a5A6H584 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
Col6a5A6H584 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a5A6H584 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Col6a5A6H584 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Col6a5A6H584 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms