Protein–RNA interactions for Protein: P32958

Rom1, Rod outer segment membrane protein 1, mousemouse

Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rom1P32958 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rom1P32958 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Rom1P32958 AC167019.3-201ENSMUST00000228225 1266 ntBASIC16.27■□□□□ 0.2
Rom1P32958 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rom1P32958 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.19
Rom1P32958 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Rom1P32958 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Rom1P32958 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC16.27■□□□□ 0.19
Rom1P32958 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC16.27■□□□□ 0.19
Rom1P32958 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rom1P32958 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rom1P32958 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Rom1P32958 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC16.26■□□□□ 0.19
Rom1P32958 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Rom1P32958 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Rom1P32958 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Rom1P32958 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rom1P32958 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Rom1P32958 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rom1P32958 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rom1P32958 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rom1P32958 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC16.25■□□□□ 0.19
Rom1P32958 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rom1P32958 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Rom1P32958 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Rom1P32958 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rom1P32958 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC16.24■□□□□ 0.19
Rom1P32958 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rom1P32958 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Rom1P32958 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rom1P32958 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
Rom1P32958 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rom1P32958 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC16.24■□□□□ 0.19
Rom1P32958 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rom1P32958 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rom1P32958 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
Rom1P32958 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rom1P32958 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rom1P32958 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rom1P32958 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC16.24■□□□□ 0.19
Rom1P32958 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Rom1P32958 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Rom1P32958 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rom1P32958 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rom1P32958 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Rom1P32958 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC16.23■□□□□ 0.19
Rom1P32958 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC16.23■□□□□ 0.19
Rom1P32958 Nsd1-206ENSMUST00000224918 1001 ntBASIC16.23■□□□□ 0.19
Rom1P32958 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
Rom1P32958 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Rom1P32958 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rom1P32958 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Rom1P32958 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rom1P32958 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rom1P32958 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rom1P32958 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Rom1P32958 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Rom1P32958 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rom1P32958 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Rom1P32958 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rom1P32958 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Rom1P32958 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rom1P32958 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rom1P32958 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rom1P32958 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC16.22■□□□□ 0.19
Rom1P32958 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Rom1P32958 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rom1P32958 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 AC122428.2-201ENSMUST00000216321 1832 ntBASIC16.21■□□□□ 0.19
Rom1P32958 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Rom1P32958 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
Rom1P32958 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Rom1P32958 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Rom1P32958 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC16.2■□□□□ 0.18
Rom1P32958 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rom1P32958 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rom1P32958 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rom1P32958 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Rom1P32958 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC16.2■□□□□ 0.18
Rom1P32958 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Rom1P32958 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rom1P32958 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Rom1P32958 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC16.19■□□□□ 0.18
Rom1P32958 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC16.19■□□□□ 0.18
Rom1P32958 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Rom1P32958 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rom1P32958 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rom1P32958 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Rom1P32958 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rom1P32958 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rom1P32958 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms