Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col6a5A6H584 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC15.9■□□□□ 0.14
Col6a5A6H584 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC15.9■□□□□ 0.14
Col6a5A6H584 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC15.89■□□□□ 0.13
Col6a5A6H584 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Col6a5A6H584 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col6a5A6H584 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC15.89■□□□□ 0.13
Col6a5A6H584 AC135637.1-201ENSMUST00000227750 365 ntBASIC15.89■□□□□ 0.13
Col6a5A6H584 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col6a5A6H584 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col6a5A6H584 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC15.89■□□□□ 0.13
Col6a5A6H584 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col6a5A6H584 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col6a5A6H584 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col6a5A6H584 Kdm3b-204ENSMUST00000224715 2032 ntBASIC15.88■□□□□ 0.13
Col6a5A6H584 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Col6a5A6H584 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col6a5A6H584 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Col6a5A6H584 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC15.87■□□□□ 0.13
Col6a5A6H584 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col6a5A6H584 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC15.87■□□□□ 0.13
Col6a5A6H584 Gm4430-201ENSMUST00000192413 1943 ntBASIC15.87■□□□□ 0.13
Col6a5A6H584 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col6a5A6H584 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
Col6a5A6H584 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col6a5A6H584 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC15.87■□□□□ 0.13
Col6a5A6H584 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC15.87■□□□□ 0.13
Col6a5A6H584 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col6a5A6H584 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col6a5A6H584 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col6a5A6H584 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Col6a5A6H584 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col6a5A6H584 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col6a5A6H584 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC15.86■□□□□ 0.13
Col6a5A6H584 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC15.86■□□□□ 0.13
Col6a5A6H584 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col6a5A6H584 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Col6a5A6H584 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col6a5A6H584 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col6a5A6H584 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC15.85■□□□□ 0.13
Col6a5A6H584 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col6a5A6H584 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col6a5A6H584 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col6a5A6H584 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col6a5A6H584 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col6a5A6H584 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Col6a5A6H584 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
Col6a5A6H584 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a5A6H584 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col6a5A6H584 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC15.83■□□□□ 0.12
Col6a5A6H584 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC15.83■□□□□ 0.12
Col6a5A6H584 Gm13836-201ENSMUST00000121159 501 ntBASIC15.82■□□□□ 0.12
Col6a5A6H584 Gm37856-201ENSMUST00000191634 999 ntBASIC15.82■□□□□ 0.12
Col6a5A6H584 Mir5133-201ENSMUST00000174955 77 ntBASIC15.82■□□□□ 0.12
Col6a5A6H584 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a5A6H584 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a5A6H584 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a5A6H584 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col6a5A6H584 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC15.82■□□□□ 0.12
Col6a5A6H584 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
Col6a5A6H584 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC15.81■□□□□ 0.12
Col6a5A6H584 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a5A6H584 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a5A6H584 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC15.81■□□□□ 0.12
Col6a5A6H584 Gm43530-201ENSMUST00000195920 274 ntBASIC15.81■□□□□ 0.12
Col6a5A6H584 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a5A6H584 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col6a5A6H584 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Col6a5A6H584 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC15.8■□□□□ 0.12
Col6a5A6H584 Gm20049-201ENSMUST00000219950 730 ntBASIC15.8■□□□□ 0.12
Col6a5A6H584 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a5A6H584 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Col6a5A6H584 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC15.8■□□□□ 0.12
Col6a5A6H584 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a5A6H584 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col6a5A6H584 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC15.8■□□□□ 0.12
Col6a5A6H584 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a5A6H584 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Col6a5A6H584 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a5A6H584 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a5A6H584 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a5A6H584 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a5A6H584 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC15.79■□□□□ 0.12
Col6a5A6H584 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a5A6H584 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a5A6H584 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a5A6H584 Gm13168-201ENSMUST00000121771 632 ntBASIC15.79■□□□□ 0.12
Col6a5A6H584 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col6a5A6H584 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC15.79■□□□□ 0.12
Col6a5A6H584 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC15.79■□□□□ 0.12
Col6a5A6H584 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC15.78■□□□□ 0.12
Col6a5A6H584 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Col6a5A6H584 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col6a5A6H584 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 81.2 ms