Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trbv1A0A0B4J1G7 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Trbv1A0A0B4J1G7 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trbv1A0A0B4J1G7 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trbv1A0A0B4J1G7 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Gm43545-201ENSMUST00000196765 2779 ntBASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trbv1A0A0B4J1G7 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC15.99■□□□□ 0.15
Trbv1A0A0B4J1G7 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trbv1A0A0B4J1G7 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Trbv1A0A0B4J1G7 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trbv1A0A0B4J1G7 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trbv1A0A0B4J1G7 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC15.98■□□□□ 0.15
Trbv1A0A0B4J1G7 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trbv1A0A0B4J1G7 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trbv1A0A0B4J1G7 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC15.96■□□□□ 0.15
Trbv1A0A0B4J1G7 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
Trbv1A0A0B4J1G7 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC15.95■□□□□ 0.14
Trbv1A0A0B4J1G7 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms