Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.98
Vps28Q9D1C8 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
Vps28Q9D1C8 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Vps28Q9D1C8 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Vps28Q9D1C8 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Vps28Q9D1C8 Gm43006-201ENSMUST00000197702 1602 ntBASIC21.16■□□□□ 0.98
Vps28Q9D1C8 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Vps28Q9D1C8 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Vps28Q9D1C8 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Vps28Q9D1C8 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Vps28Q9D1C8 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Vps28Q9D1C8 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Vps28Q9D1C8 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Vps28Q9D1C8 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Vps28Q9D1C8 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Vps28Q9D1C8 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Vps28Q9D1C8 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Vps28Q9D1C8 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Vps28Q9D1C8 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Vps28Q9D1C8 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Vps28Q9D1C8 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Vps28Q9D1C8 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Vps28Q9D1C8 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Vps28Q9D1C8 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
Vps28Q9D1C8 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Vps28Q9D1C8 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Vps28Q9D1C8 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Vps28Q9D1C8 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Vps28Q9D1C8 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Vps28Q9D1C8 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Vps28Q9D1C8 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Vps28Q9D1C8 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Vps28Q9D1C8 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Vps28Q9D1C8 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Vps28Q9D1C8 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Vps28Q9D1C8 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Vps28Q9D1C8 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Vps28Q9D1C8 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Vps28Q9D1C8 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Vps28Q9D1C8 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Vps28Q9D1C8 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
Vps28Q9D1C8 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Vps28Q9D1C8 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Vps28Q9D1C8 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Vps28Q9D1C8 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Vps28Q9D1C8 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Vps28Q9D1C8 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps28Q9D1C8 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Vps28Q9D1C8 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Vps28Q9D1C8 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.09■□□□□ 0.97
Vps28Q9D1C8 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Vps28Q9D1C8 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC21.09■□□□□ 0.97
Vps28Q9D1C8 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.08■□□□□ 0.97
Vps28Q9D1C8 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
Vps28Q9D1C8 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Vps28Q9D1C8 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Vps28Q9D1C8 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.08■□□□□ 0.97
Vps28Q9D1C8 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC21.08■□□□□ 0.97
Vps28Q9D1C8 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Vps28Q9D1C8 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.08■□□□□ 0.97
Vps28Q9D1C8 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Vps28Q9D1C8 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Vps28Q9D1C8 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Vps28Q9D1C8 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps28Q9D1C8 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Vps28Q9D1C8 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Vps28Q9D1C8 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.07■□□□□ 0.96
Vps28Q9D1C8 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps28Q9D1C8 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Vps28Q9D1C8 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps28Q9D1C8 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps28Q9D1C8 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps28Q9D1C8 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps28Q9D1C8 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21.06■□□□□ 0.96
Vps28Q9D1C8 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.06■□□□□ 0.96
Vps28Q9D1C8 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps28Q9D1C8 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps28Q9D1C8 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
Vps28Q9D1C8 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Vps28Q9D1C8 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps28Q9D1C8 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.05■□□□□ 0.96
Vps28Q9D1C8 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps28Q9D1C8 Gm37415-201ENSMUST00000192265 2054 ntBASIC21.05■□□□□ 0.96
Vps28Q9D1C8 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps28Q9D1C8 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps28Q9D1C8 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps28Q9D1C8 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps28Q9D1C8 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 91.9 ms