Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.26■□□□□ 0.67
Ddx28Q9CWT6 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx28Q9CWT6 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
Ddx28Q9CWT6 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Ddx28Q9CWT6 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx28Q9CWT6 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.25■□□□□ 0.67
Ddx28Q9CWT6 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Ddx28Q9CWT6 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.25■□□□□ 0.67
Ddx28Q9CWT6 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC19.25■□□□□ 0.67
Ddx28Q9CWT6 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.25■□□□□ 0.67
Ddx28Q9CWT6 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx28Q9CWT6 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.25■□□□□ 0.67
Ddx28Q9CWT6 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx28Q9CWT6 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx28Q9CWT6 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.24■□□□□ 0.67
Ddx28Q9CWT6 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx28Q9CWT6 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx28Q9CWT6 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx28Q9CWT6 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx28Q9CWT6 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.24■□□□□ 0.67
Ddx28Q9CWT6 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx28Q9CWT6 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Ddx28Q9CWT6 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx28Q9CWT6 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx28Q9CWT6 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx28Q9CWT6 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.23■□□□□ 0.67
Ddx28Q9CWT6 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.23■□□□□ 0.67
Ddx28Q9CWT6 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Ddx28Q9CWT6 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Ddx28Q9CWT6 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx28Q9CWT6 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Ddx28Q9CWT6 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx28Q9CWT6 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx28Q9CWT6 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddx28Q9CWT6 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.17■□□□□ 0.66
Ddx28Q9CWT6 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Ddx28Q9CWT6 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Ddx28Q9CWT6 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms