Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC16.2■□□□□ 0.18
Trbv1A0A0B4J1G7 Gm8093-201ENSMUST00000128935 1892 ntBASIC16.2■□□□□ 0.18
Trbv1A0A0B4J1G7 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trbv1A0A0B4J1G7 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Trbv1A0A0B4J1G7 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 AC117769.4-201ENSMUST00000225679 685 ntBASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv1A0A0B4J1G7 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv1A0A0B4J1G7 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv1A0A0B4J1G7 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv1A0A0B4J1G7 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC16.18■□□□□ 0.18
Trbv1A0A0B4J1G7 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv1A0A0B4J1G7 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv1A0A0B4J1G7 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv1A0A0B4J1G7 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv1A0A0B4J1G7 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv1A0A0B4J1G7 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv1A0A0B4J1G7 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv1A0A0B4J1G7 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv1A0A0B4J1G7 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv1A0A0B4J1G7 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv1A0A0B4J1G7 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv1A0A0B4J1G7 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv1A0A0B4J1G7 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trbv1A0A0B4J1G7 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv1A0A0B4J1G7 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv1A0A0B4J1G7 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Trbv1A0A0B4J1G7 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC16.15■□□□□ 0.18
Trbv1A0A0B4J1G7 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Trbv1A0A0B4J1G7 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trbv1A0A0B4J1G7 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv1A0A0B4J1G7 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv1A0A0B4J1G7 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv1A0A0B4J1G7 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv1A0A0B4J1G7 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv1A0A0B4J1G7 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv1A0A0B4J1G7 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Trbv1A0A0B4J1G7 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Gm43403-201ENSMUST00000198011 1786 ntBASIC16.13■□□□□ 0.17
Trbv1A0A0B4J1G7 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv1A0A0B4J1G7 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Snhg20-203ENSMUST00000182811 2153 ntBASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv1A0A0B4J1G7 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms