Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Lsm1Q8VC85 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Lsm1Q8VC85 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Lsm1Q8VC85 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lsm1Q8VC85 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lsm1Q8VC85 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Lsm1Q8VC85 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lsm1Q8VC85 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.03■□□□□ 0.8
Lsm1Q8VC85 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lsm1Q8VC85 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Lsm1Q8VC85 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Lsm1Q8VC85 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Lsm1Q8VC85 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Lsm1Q8VC85 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Lsm1Q8VC85 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Lsm1Q8VC85 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lsm1Q8VC85 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lsm1Q8VC85 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Lsm1Q8VC85 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lsm1Q8VC85 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lsm1Q8VC85 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.01■□□□□ 0.79
Lsm1Q8VC85 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lsm1Q8VC85 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Lsm1Q8VC85 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.01■□□□□ 0.79
Lsm1Q8VC85 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lsm1Q8VC85 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Lsm1Q8VC85 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Lsm1Q8VC85 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
Lsm1Q8VC85 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Lsm1Q8VC85 Gm5913-201ENSMUST00000119397 1399 ntBASIC20■□□□□ 0.79
Lsm1Q8VC85 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Lsm1Q8VC85 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Lsm1Q8VC85 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20■□□□□ 0.79
Lsm1Q8VC85 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20■□□□□ 0.79
Lsm1Q8VC85 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20■□□□□ 0.79
Lsm1Q8VC85 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Lsm1Q8VC85 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Lsm1Q8VC85 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Lsm1Q8VC85 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Lsm1Q8VC85 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Lsm1Q8VC85 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lsm1Q8VC85 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lsm1Q8VC85 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lsm1Q8VC85 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lsm1Q8VC85 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC19.99■□□□□ 0.79
Lsm1Q8VC85 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
Lsm1Q8VC85 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.99■□□□□ 0.79
Lsm1Q8VC85 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lsm1Q8VC85 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lsm1Q8VC85 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.98■□□□□ 0.79
Lsm1Q8VC85 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Lsm1Q8VC85 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Lsm1Q8VC85 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lsm1Q8VC85 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Lsm1Q8VC85 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Lsm1Q8VC85 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lsm1Q8VC85 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.98■□□□□ 0.79
Lsm1Q8VC85 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Lsm1Q8VC85 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lsm1Q8VC85 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lsm1Q8VC85 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lsm1Q8VC85 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lsm1Q8VC85 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lsm1Q8VC85 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Lsm1Q8VC85 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lsm1Q8VC85 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Lsm1Q8VC85 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lsm1Q8VC85 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.95■□□□□ 0.78
Lsm1Q8VC85 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lsm1Q8VC85 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.95■□□□□ 0.78
Lsm1Q8VC85 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lsm1Q8VC85 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Lsm1Q8VC85 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Lsm1Q8VC85 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lsm1Q8VC85 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.94■□□□□ 0.78
Lsm1Q8VC85 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lsm1Q8VC85 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lsm1Q8VC85 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms