Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim63Q38HM4 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim63Q38HM4 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim63Q38HM4 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.36■□□□□ 0.37
Trim63Q38HM4 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim63Q38HM4 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim63Q38HM4 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
Trim63Q38HM4 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Trim63Q38HM4 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim63Q38HM4 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim63Q38HM4 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim63Q38HM4 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim63Q38HM4 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Trim63Q38HM4 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim63Q38HM4 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim63Q38HM4 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim63Q38HM4 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim63Q38HM4 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim63Q38HM4 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim63Q38HM4 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Trim63Q38HM4 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Trim63Q38HM4 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Trim63Q38HM4 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Trim63Q38HM4 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim63Q38HM4 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim63Q38HM4 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim63Q38HM4 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim63Q38HM4 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim63Q38HM4 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trim63Q38HM4 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim63Q38HM4 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.33■□□□□ 0.36
Trim63Q38HM4 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Trim63Q38HM4 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim63Q38HM4 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim63Q38HM4 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim63Q38HM4 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim63Q38HM4 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim63Q38HM4 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim63Q38HM4 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim63Q38HM4 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim63Q38HM4 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim63Q38HM4 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC17.31■□□□□ 0.36
Trim63Q38HM4 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim63Q38HM4 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim63Q38HM4 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim63Q38HM4 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim63Q38HM4 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim63Q38HM4 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim63Q38HM4 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Trim63Q38HM4 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim63Q38HM4 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim63Q38HM4 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim63Q38HM4 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim63Q38HM4 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim63Q38HM4 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim63Q38HM4 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim63Q38HM4 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim63Q38HM4 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim63Q38HM4 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trim63Q38HM4 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim63Q38HM4 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim63Q38HM4 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim63Q38HM4 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Trim63Q38HM4 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim63Q38HM4 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim63Q38HM4 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC17.29■□□□□ 0.36
Trim63Q38HM4 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Trim63Q38HM4 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim63Q38HM4 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim63Q38HM4 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim63Q38HM4 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim63Q38HM4 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim63Q38HM4 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim63Q38HM4 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim63Q38HM4 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim63Q38HM4 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim63Q38HM4 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Trim63Q38HM4 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim63Q38HM4 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Trim63Q38HM4 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim63Q38HM4 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim63Q38HM4 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim63Q38HM4 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim63Q38HM4 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim63Q38HM4 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim63Q38HM4 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim63Q38HM4 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Trim63Q38HM4 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim63Q38HM4 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim63Q38HM4 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms