Protein–RNA interactions for Protein: Q9Z0S7

Cldn9, Claudin-9, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn9Q9Z0S7 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cldn9Q9Z0S7 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Cldn9Q9Z0S7 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 AC116713.1-201ENSMUST00000215074 430 ntBASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 AC158990.1-201ENSMUST00000221450 2016 ntBASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cldn9Q9Z0S7 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 AC164883.3-201ENSMUST00000227396 1774 ntBASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cldn9Q9Z0S7 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cldn9Q9Z0S7 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cldn9Q9Z0S7 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.22■□□□□ 0.83
Cldn9Q9Z0S7 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cldn9Q9Z0S7 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
Cldn9Q9Z0S7 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Cldn9Q9Z0S7 Gm28536-201ENSMUST00000190971 1317 ntBASIC20.22■□□□□ 0.83
Cldn9Q9Z0S7 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Cldn9Q9Z0S7 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cldn9Q9Z0S7 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cldn9Q9Z0S7 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cldn9Q9Z0S7 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Cldn9Q9Z0S7 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Cldn9Q9Z0S7 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cldn9Q9Z0S7 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Cldn9Q9Z0S7 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cldn9Q9Z0S7 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cldn9Q9Z0S7 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cldn9Q9Z0S7 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Cldn9Q9Z0S7 Gm11847-201ENSMUST00000125165 1119 ntBASIC20.2■□□□□ 0.82
Cldn9Q9Z0S7 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Cldn9Q9Z0S7 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cldn9Q9Z0S7 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.2■□□□□ 0.82
Cldn9Q9Z0S7 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
Cldn9Q9Z0S7 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cldn9Q9Z0S7 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.2■□□□□ 0.82
Cldn9Q9Z0S7 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn9Q9Z0S7 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn9Q9Z0S7 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn9Q9Z0S7 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn9Q9Z0S7 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn9Q9Z0S7 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC20.19■□□□□ 0.82
Cldn9Q9Z0S7 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cldn9Q9Z0S7 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn9Q9Z0S7 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn9Q9Z0S7 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Cldn9Q9Z0S7 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn9Q9Z0S7 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn9Q9Z0S7 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.18■□□□□ 0.82
Cldn9Q9Z0S7 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Cldn9Q9Z0S7 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn9Q9Z0S7 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cldn9Q9Z0S7 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
Cldn9Q9Z0S7 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn9Q9Z0S7 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn9Q9Z0S7 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Cldn9Q9Z0S7 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn9Q9Z0S7 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn9Q9Z0S7 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn9Q9Z0S7 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cldn9Q9Z0S7 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cldn9Q9Z0S7 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.16■□□□□ 0.82
Cldn9Q9Z0S7 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.16■□□□□ 0.82
Cldn9Q9Z0S7 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Cldn9Q9Z0S7 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cldn9Q9Z0S7 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cldn9Q9Z0S7 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cldn9Q9Z0S7 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cldn9Q9Z0S7 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.16■□□□□ 0.82
Cldn9Q9Z0S7 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.16■□□□□ 0.82
Cldn9Q9Z0S7 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Cldn9Q9Z0S7 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cldn9Q9Z0S7 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Cldn9Q9Z0S7 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Cldn9Q9Z0S7 Gm45444-201ENSMUST00000211394 898 ntBASIC20.15■□□□□ 0.82
Cldn9Q9Z0S7 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cldn9Q9Z0S7 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cldn9Q9Z0S7 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Cldn9Q9Z0S7 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cldn9Q9Z0S7 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cldn9Q9Z0S7 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cldn9Q9Z0S7 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cldn9Q9Z0S7 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms