Protein–RNA interactions for Protein: Q8CDD9

Lrif1, Ligand-dependent nuclear receptor-interacting factor 1, mousemouse

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lrif1Q8CDD9 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lrif1Q8CDD9 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Lrif1Q8CDD9 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lrif1Q8CDD9 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Lrif1Q8CDD9 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lrif1Q8CDD9 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lrif1Q8CDD9 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lrif1Q8CDD9 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
Lrif1Q8CDD9 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Gm14523-201ENSMUST00000117260 558 ntBASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Gm7332-201ENSMUST00000118351 454 ntBASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lrif1Q8CDD9 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lrif1Q8CDD9 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.69■□□□□ 0.9
Lrif1Q8CDD9 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.69■□□□□ 0.9
Lrif1Q8CDD9 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lrif1Q8CDD9 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Lrif1Q8CDD9 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.69■□□□□ 0.9
Lrif1Q8CDD9 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.69■□□□□ 0.9
Lrif1Q8CDD9 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lrif1Q8CDD9 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Lrif1Q8CDD9 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.68■□□□□ 0.9
Lrif1Q8CDD9 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lrif1Q8CDD9 Gm27502-201ENSMUST00000183495 199 ntBASIC20.68■□□□□ 0.9
Lrif1Q8CDD9 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lrif1Q8CDD9 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lrif1Q8CDD9 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Lrif1Q8CDD9 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.67■□□□□ 0.9
Lrif1Q8CDD9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lrif1Q8CDD9 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Lrif1Q8CDD9 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Lrif1Q8CDD9 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lrif1Q8CDD9 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lrif1Q8CDD9 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Lrif1Q8CDD9 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lrif1Q8CDD9 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lrif1Q8CDD9 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lrif1Q8CDD9 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Lrif1Q8CDD9 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lrif1Q8CDD9 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lrif1Q8CDD9 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Lrif1Q8CDD9 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.64■□□□□ 0.9
Lrif1Q8CDD9 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lrif1Q8CDD9 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.64■□□□□ 0.89
Lrif1Q8CDD9 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lrif1Q8CDD9 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lrif1Q8CDD9 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lrif1Q8CDD9 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Lrif1Q8CDD9 Golph3-202ENSMUST00000226517 2359 ntBASIC20.64■□□□□ 0.89
Lrif1Q8CDD9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lrif1Q8CDD9 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lrif1Q8CDD9 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lrif1Q8CDD9 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lrif1Q8CDD9 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Lrif1Q8CDD9 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Lrif1Q8CDD9 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lrif1Q8CDD9 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
Lrif1Q8CDD9 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lrif1Q8CDD9 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Lrif1Q8CDD9 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lrif1Q8CDD9 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lrif1Q8CDD9 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.62■□□□□ 0.89
Lrif1Q8CDD9 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Lrif1Q8CDD9 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Lrif1Q8CDD9 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lrif1Q8CDD9 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Lrif1Q8CDD9 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.62■□□□□ 0.89
Lrif1Q8CDD9 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms