Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.22■□□□□ 0.99
Sh3rf1Q69ZI1 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf1Q69ZI1 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC21.21■□□□□ 0.99
Sh3rf1Q69ZI1 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sh3rf1Q69ZI1 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sh3rf1Q69ZI1 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sh3rf1Q69ZI1 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sh3rf1Q69ZI1 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC21.21■□□□□ 0.99
Sh3rf1Q69ZI1 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.21■□□□□ 0.99
Sh3rf1Q69ZI1 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sh3rf1Q69ZI1 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC21.21■□□□□ 0.99
Sh3rf1Q69ZI1 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC21.21■□□□□ 0.99
Sh3rf1Q69ZI1 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sh3rf1Q69ZI1 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sh3rf1Q69ZI1 Gm13238-201ENSMUST00000117655 780 ntBASIC21.2■□□□□ 0.98
Sh3rf1Q69ZI1 Gm15820-201ENSMUST00000201566 728 ntBASIC21.2■□□□□ 0.98
Sh3rf1Q69ZI1 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Sh3rf1Q69ZI1 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sh3rf1Q69ZI1 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sh3rf1Q69ZI1 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Sh3rf1Q69ZI1 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC21.19■□□□□ 0.98
Sh3rf1Q69ZI1 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sh3rf1Q69ZI1 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Sh3rf1Q69ZI1 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Sh3rf1Q69ZI1 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Sh3rf1Q69ZI1 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sh3rf1Q69ZI1 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sh3rf1Q69ZI1 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sh3rf1Q69ZI1 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sh3rf1Q69ZI1 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sh3rf1Q69ZI1 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Sh3rf1Q69ZI1 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sh3rf1Q69ZI1 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
Sh3rf1Q69ZI1 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC21.16■□□□□ 0.98
Sh3rf1Q69ZI1 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.16■□□□□ 0.98
Sh3rf1Q69ZI1 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Sh3rf1Q69ZI1 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Sh3rf1Q69ZI1 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC21.16■□□□□ 0.98
Sh3rf1Q69ZI1 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Sh3rf1Q69ZI1 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Sh3rf1Q69ZI1 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC21.16■□□□□ 0.98
Sh3rf1Q69ZI1 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Sh3rf1Q69ZI1 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC21.15■□□□□ 0.98
Sh3rf1Q69ZI1 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
Sh3rf1Q69ZI1 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
Sh3rf1Q69ZI1 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Sh3rf1Q69ZI1 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Sh3rf1Q69ZI1 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.15■□□□□ 0.98
Sh3rf1Q69ZI1 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Sh3rf1Q69ZI1 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
Sh3rf1Q69ZI1 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
Sh3rf1Q69ZI1 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Sh3rf1Q69ZI1 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Sh3rf1Q69ZI1 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Sh3rf1Q69ZI1 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Sh3rf1Q69ZI1 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Sh3rf1Q69ZI1 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Sh3rf1Q69ZI1 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Sh3rf1Q69ZI1 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC21.14■□□□□ 0.97
Sh3rf1Q69ZI1 Gm43566-201ENSMUST00000196851 808 ntBASIC21.14■□□□□ 0.97
Sh3rf1Q69ZI1 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Sh3rf1Q69ZI1 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Sh3rf1Q69ZI1 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Sh3rf1Q69ZI1 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.13■□□□□ 0.97
Sh3rf1Q69ZI1 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Sh3rf1Q69ZI1 Gm45444-201ENSMUST00000211394 898 ntBASIC21.13■□□□□ 0.97
Sh3rf1Q69ZI1 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Sh3rf1Q69ZI1 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Sh3rf1Q69ZI1 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Sh3rf1Q69ZI1 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Sh3rf1Q69ZI1 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Sh3rf1Q69ZI1 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Sh3rf1Q69ZI1 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Sh3rf1Q69ZI1 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC21.12■□□□□ 0.97
Sh3rf1Q69ZI1 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Sh3rf1Q69ZI1 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC21.12■□□□□ 0.97
Sh3rf1Q69ZI1 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sh3rf1Q69ZI1 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sh3rf1Q69ZI1 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sh3rf1Q69ZI1 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sh3rf1Q69ZI1 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sh3rf1Q69ZI1 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sh3rf1Q69ZI1 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sh3rf1Q69ZI1 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sh3rf1Q69ZI1 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Sh3rf1Q69ZI1 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Sh3rf1Q69ZI1 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms