Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cd40lgP27548 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.24■□□□□ 0.67
Cd40lgP27548 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.24■□□□□ 0.67
Cd40lgP27548 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.24■□□□□ 0.67
Cd40lgP27548 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cd40lgP27548 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cd40lgP27548 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cd40lgP27548 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cd40lgP27548 Notumos-201ENSMUST00000151998 2659 ntBASIC19.23■□□□□ 0.67
Cd40lgP27548 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cd40lgP27548 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cd40lgP27548 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Cd40lgP27548 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cd40lgP27548 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cd40lgP27548 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.23■□□□□ 0.67
Cd40lgP27548 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cd40lgP27548 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC19.23■□□□□ 0.67
Cd40lgP27548 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cd40lgP27548 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cd40lgP27548 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cd40lgP27548 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.23■□□□□ 0.67
Cd40lgP27548 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC19.23■□□□□ 0.67
Cd40lgP27548 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cd40lgP27548 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Cd40lgP27548 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cd40lgP27548 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.22■□□□□ 0.67
Cd40lgP27548 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC19.22■□□□□ 0.67
Cd40lgP27548 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cd40lgP27548 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cd40lgP27548 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cd40lgP27548 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cd40lgP27548 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cd40lgP27548 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Cd40lgP27548 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Cd40lgP27548 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cd40lgP27548 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cd40lgP27548 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cd40lgP27548 Gm13042-201ENSMUST00000119244 1955 ntBASIC19.21■□□□□ 0.67
Cd40lgP27548 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cd40lgP27548 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cd40lgP27548 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cd40lgP27548 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cd40lgP27548 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cd40lgP27548 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cd40lgP27548 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.19■□□□□ 0.66
Cd40lgP27548 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cd40lgP27548 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Cd40lgP27548 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cd40lgP27548 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cd40lgP27548 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.19■□□□□ 0.66
Cd40lgP27548 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cd40lgP27548 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cd40lgP27548 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cd40lgP27548 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cd40lgP27548 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.18■□□□□ 0.66
Cd40lgP27548 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cd40lgP27548 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.18■□□□□ 0.66
Cd40lgP27548 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.18■□□□□ 0.66
Cd40lgP27548 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cd40lgP27548 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Cd40lgP27548 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cd40lgP27548 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cd40lgP27548 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC19.17■□□□□ 0.66
Cd40lgP27548 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cd40lgP27548 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Cd40lgP27548 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cd40lgP27548 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Cd40lgP27548 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.17■□□□□ 0.66
Cd40lgP27548 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cd40lgP27548 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cd40lgP27548 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cd40lgP27548 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cd40lgP27548 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cd40lgP27548 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cd40lgP27548 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cd40lgP27548 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Cd40lgP27548 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cd40lgP27548 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.16■□□□□ 0.66
Cd40lgP27548 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cd40lgP27548 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cd40lgP27548 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cd40lgP27548 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cd40lgP27548 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cd40lgP27548 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cd40lgP27548 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cd40lgP27548 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Cd40lgP27548 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC19.15■□□□□ 0.66
Cd40lgP27548 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cd40lgP27548 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC19.15■□□□□ 0.66
Cd40lgP27548 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Cd40lgP27548 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cd40lgP27548 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cd40lgP27548 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cd40lgP27548 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cd40lgP27548 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cd40lgP27548 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cd40lgP27548 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cd40lgP27548 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cd40lgP27548 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Cd40lgP27548 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 134.6 ms