Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Scn2aA0A0J9YTW6 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn2aA0A0J9YTW6 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn2aA0A0J9YTW6 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn2aA0A0J9YTW6 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn2aA0A0J9YTW6 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn2aA0A0J9YTW6 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
Scn2aA0A0J9YTW6 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Scn2aA0A0J9YTW6 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn2aA0A0J9YTW6 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn2aA0A0J9YTW6 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Scn2aA0A0J9YTW6 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn2aA0A0J9YTW6 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn2aA0A0J9YTW6 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.37■□□□□ 0.69
Scn2aA0A0J9YTW6 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.37■□□□□ 0.69
Scn2aA0A0J9YTW6 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scn2aA0A0J9YTW6 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scn2aA0A0J9YTW6 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.36■□□□□ 0.69
Scn2aA0A0J9YTW6 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn2aA0A0J9YTW6 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn2aA0A0J9YTW6 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn2aA0A0J9YTW6 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC19.35■□□□□ 0.69
Scn2aA0A0J9YTW6 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn2aA0A0J9YTW6 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn2aA0A0J9YTW6 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.35■□□□□ 0.69
Scn2aA0A0J9YTW6 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Scn2aA0A0J9YTW6 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC19.35■□□□□ 0.69
Scn2aA0A0J9YTW6 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC19.35■□□□□ 0.69
Scn2aA0A0J9YTW6 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.35■□□□□ 0.69
Scn2aA0A0J9YTW6 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Scn2aA0A0J9YTW6 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn2aA0A0J9YTW6 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.34■□□□□ 0.69
Scn2aA0A0J9YTW6 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn2aA0A0J9YTW6 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn2aA0A0J9YTW6 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn2aA0A0J9YTW6 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Scn2aA0A0J9YTW6 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn2aA0A0J9YTW6 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Scn2aA0A0J9YTW6 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn2aA0A0J9YTW6 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn2aA0A0J9YTW6 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Scn2aA0A0J9YTW6 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scn2aA0A0J9YTW6 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC19.33■□□□□ 0.68
Scn2aA0A0J9YTW6 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scn2aA0A0J9YTW6 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Scn2aA0A0J9YTW6 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
Scn2aA0A0J9YTW6 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Scn2aA0A0J9YTW6 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn2aA0A0J9YTW6 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scn2aA0A0J9YTW6 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn2aA0A0J9YTW6 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn2aA0A0J9YTW6 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
Scn2aA0A0J9YTW6 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC19.31■□□□□ 0.68
Scn2aA0A0J9YTW6 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn2aA0A0J9YTW6 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Scn2aA0A0J9YTW6 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC19.3■□□□□ 0.68
Scn2aA0A0J9YTW6 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC19.3■□□□□ 0.68
Scn2aA0A0J9YTW6 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn2aA0A0J9YTW6 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.3■□□□□ 0.68
Scn2aA0A0J9YTW6 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC19.3■□□□□ 0.68
Scn2aA0A0J9YTW6 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn2aA0A0J9YTW6 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC19.3■□□□□ 0.68
Scn2aA0A0J9YTW6 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scn2aA0A0J9YTW6 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn2aA0A0J9YTW6 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn2aA0A0J9YTW6 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Scn2aA0A0J9YTW6 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn2aA0A0J9YTW6 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn2aA0A0J9YTW6 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.27■□□□□ 0.68
Scn2aA0A0J9YTW6 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Scn2aA0A0J9YTW6 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Scn2aA0A0J9YTW6 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn2aA0A0J9YTW6 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.27■□□□□ 0.67
Scn2aA0A0J9YTW6 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.27■□□□□ 0.67
Scn2aA0A0J9YTW6 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
Scn2aA0A0J9YTW6 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn2aA0A0J9YTW6 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn2aA0A0J9YTW6 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms