Protein–RNA interactions for Protein: Q9CQV4

Retreg3, Reticulophagy regulator 3, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Retreg3Q9CQV4 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Retreg3Q9CQV4 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Retreg3Q9CQV4 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Retreg3Q9CQV4 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Retreg3Q9CQV4 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retreg3Q9CQV4 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Retreg3Q9CQV4 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retreg3Q9CQV4 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retreg3Q9CQV4 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retreg3Q9CQV4 Gm37415-201ENSMUST00000192265 2054 ntBASIC21.35■■□□□ 1.01
Retreg3Q9CQV4 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retreg3Q9CQV4 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retreg3Q9CQV4 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.35■■□□□ 1.01
Retreg3Q9CQV4 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retreg3Q9CQV4 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.35■■□□□ 1.01
Retreg3Q9CQV4 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retreg3Q9CQV4 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.34■■□□□ 1.01
Retreg3Q9CQV4 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.34■■□□□ 1.01
Retreg3Q9CQV4 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.34■■□□□ 1.01
Retreg3Q9CQV4 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.34■■□□□ 1.01
Retreg3Q9CQV4 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retreg3Q9CQV4 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Retreg3Q9CQV4 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Retreg3Q9CQV4 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Retreg3Q9CQV4 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Retreg3Q9CQV4 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Retreg3Q9CQV4 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC21.33■■□□□ 1.01
Retreg3Q9CQV4 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC21.33■■□□□ 1
Retreg3Q9CQV4 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Retreg3Q9CQV4 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
Retreg3Q9CQV4 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retreg3Q9CQV4 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retreg3Q9CQV4 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21.32■■□□□ 1
Retreg3Q9CQV4 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retreg3Q9CQV4 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.32■■□□□ 1
Retreg3Q9CQV4 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.31■■□□□ 1
Retreg3Q9CQV4 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retreg3Q9CQV4 Gm15820-201ENSMUST00000201566 728 ntBASIC21.31■■□□□ 1
Retreg3Q9CQV4 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC21.31■■□□□ 1
Retreg3Q9CQV4 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retreg3Q9CQV4 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Retreg3Q9CQV4 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
Retreg3Q9CQV4 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC21.3■■□□□ 1
Retreg3Q9CQV4 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.3■■□□□ 1
Retreg3Q9CQV4 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Retreg3Q9CQV4 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC21.3■■□□□ 1
Retreg3Q9CQV4 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Retreg3Q9CQV4 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Retreg3Q9CQV4 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retreg3Q9CQV4 Gm8093-201ENSMUST00000128935 1892 ntBASIC21.29■■□□□ 1
Retreg3Q9CQV4 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Retreg3Q9CQV4 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retreg3Q9CQV4 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Retreg3Q9CQV4 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC21.29■■□□□ 1
Retreg3Q9CQV4 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Retreg3Q9CQV4 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
Retreg3Q9CQV4 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Retreg3Q9CQV4 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.28■■□□□ 1
Retreg3Q9CQV4 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
Retreg3Q9CQV4 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Retreg3Q9CQV4 Gm11847-201ENSMUST00000125165 1119 ntBASIC21.27■■□□□ 1
Retreg3Q9CQV4 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC21.27■■□□□ 1
Retreg3Q9CQV4 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC21.27■■□□□ 1
Retreg3Q9CQV4 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC21.27■■□□□ 1
Retreg3Q9CQV4 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
Retreg3Q9CQV4 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Retreg3Q9CQV4 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Retreg3Q9CQV4 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 Gm42501-201ENSMUST00000200220 1026 ntBASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 Gm45102-201ENSMUST00000207427 857 ntBASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retreg3Q9CQV4 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
Retreg3Q9CQV4 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retreg3Q9CQV4 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retreg3Q9CQV4 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.25■□□□□ 0.99
Retreg3Q9CQV4 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC21.25■□□□□ 0.99
Retreg3Q9CQV4 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retreg3Q9CQV4 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retreg3Q9CQV4 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retreg3Q9CQV4 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retreg3Q9CQV4 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retreg3Q9CQV4 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Retreg3Q9CQV4 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retreg3Q9CQV4 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retreg3Q9CQV4 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retreg3Q9CQV4 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retreg3Q9CQV4 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retreg3Q9CQV4 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retreg3Q9CQV4 Gm16464-201ENSMUST00000117815 1095 ntBASIC21.23■□□□□ 0.99
Retreg3Q9CQV4 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retreg3Q9CQV4 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC21.23■□□□□ 0.99
Retreg3Q9CQV4 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Retreg3Q9CQV4 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms