Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cd40lgP27548 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Cd40lgP27548 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cd40lgP27548 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Cd40lgP27548 Gm15546-201ENSMUST00000122095 826 ntBASIC19.34■□□□□ 0.69
Cd40lgP27548 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Cd40lgP27548 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.34■□□□□ 0.69
Cd40lgP27548 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cd40lgP27548 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Cd40lgP27548 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.33■□□□□ 0.69
Cd40lgP27548 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cd40lgP27548 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cd40lgP27548 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cd40lgP27548 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cd40lgP27548 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Cd40lgP27548 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cd40lgP27548 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cd40lgP27548 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cd40lgP27548 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Cd40lgP27548 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cd40lgP27548 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Cd40lgP27548 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cd40lgP27548 Gm15820-201ENSMUST00000201566 728 ntBASIC19.32■□□□□ 0.68
Cd40lgP27548 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
Cd40lgP27548 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.32■□□□□ 0.68
Cd40lgP27548 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cd40lgP27548 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Cd40lgP27548 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cd40lgP27548 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cd40lgP27548 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Cd40lgP27548 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cd40lgP27548 Gm13238-201ENSMUST00000117655 780 ntBASIC19.31■□□□□ 0.68
Cd40lgP27548 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.31■□□□□ 0.68
Cd40lgP27548 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Cd40lgP27548 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.31■□□□□ 0.68
Cd40lgP27548 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cd40lgP27548 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cd40lgP27548 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Cd40lgP27548 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cd40lgP27548 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Cd40lgP27548 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cd40lgP27548 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Cd40lgP27548 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cd40lgP27548 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cd40lgP27548 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cd40lgP27548 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
Cd40lgP27548 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Cd40lgP27548 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cd40lgP27548 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cd40lgP27548 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Cd40lgP27548 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cd40lgP27548 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cd40lgP27548 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cd40lgP27548 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Cd40lgP27548 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.29■□□□□ 0.68
Cd40lgP27548 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cd40lgP27548 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cd40lgP27548 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cd40lgP27548 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cd40lgP27548 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Cd40lgP27548 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cd40lgP27548 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cd40lgP27548 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.28■□□□□ 0.68
Cd40lgP27548 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cd40lgP27548 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cd40lgP27548 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Cd40lgP27548 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
Cd40lgP27548 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cd40lgP27548 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Cd40lgP27548 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Cd40lgP27548 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cd40lgP27548 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cd40lgP27548 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.27■□□□□ 0.68
Cd40lgP27548 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cd40lgP27548 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cd40lgP27548 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cd40lgP27548 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cd40lgP27548 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cd40lgP27548 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cd40lgP27548 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cd40lgP27548 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cd40lgP27548 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cd40lgP27548 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cd40lgP27548 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.26■□□□□ 0.67
Cd40lgP27548 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Cd40lgP27548 Gm10232-201ENSMUST00000089221 720 ntBASIC19.26■□□□□ 0.67
Cd40lgP27548 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Cd40lgP27548 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cd40lgP27548 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Cd40lgP27548 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cd40lgP27548 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cd40lgP27548 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cd40lgP27548 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cd40lgP27548 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Cd40lgP27548 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cd40lgP27548 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Cd40lgP27548 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cd40lgP27548 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cd40lgP27548 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC19.25■□□□□ 0.67
Cd40lgP27548 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms