Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6-1A0A075B5Z8 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Trav6-1A0A075B5Z8 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC17.02■□□□□ 0.32
Trav6-1A0A075B5Z8 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Trav6-1A0A075B5Z8 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6-1A0A075B5Z8 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC17.02■□□□□ 0.32
Trav6-1A0A075B5Z8 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC17.02■□□□□ 0.32
Trav6-1A0A075B5Z8 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6-1A0A075B5Z8 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav6-1A0A075B5Z8 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
Trav6-1A0A075B5Z8 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
Trav6-1A0A075B5Z8 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Trav6-1A0A075B5Z8 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-1A0A075B5Z8 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-1A0A075B5Z8 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-1A0A075B5Z8 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-1A0A075B5Z8 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-1A0A075B5Z8 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC17.01■□□□□ 0.31
Trav6-1A0A075B5Z8 AC164883.3-201ENSMUST00000227396 1774 ntBASIC17.01■□□□□ 0.31
Trav6-1A0A075B5Z8 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Trav6-1A0A075B5Z8 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6-1A0A075B5Z8 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6-1A0A075B5Z8 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC16.99■□□□□ 0.31
Trav6-1A0A075B5Z8 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC16.99■□□□□ 0.31
Trav6-1A0A075B5Z8 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6-1A0A075B5Z8 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6-1A0A075B5Z8 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6-1A0A075B5Z8 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6-1A0A075B5Z8 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6-1A0A075B5Z8 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6-1A0A075B5Z8 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6-1A0A075B5Z8 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6-1A0A075B5Z8 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6-1A0A075B5Z8 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6-1A0A075B5Z8 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6-1A0A075B5Z8 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav6-1A0A075B5Z8 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav6-1A0A075B5Z8 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6-1A0A075B5Z8 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6-1A0A075B5Z8 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6-1A0A075B5Z8 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6-1A0A075B5Z8 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC16.96■□□□□ 0.31
Trav6-1A0A075B5Z8 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC16.96■□□□□ 0.31
Trav6-1A0A075B5Z8 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6-1A0A075B5Z8 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC16.96■□□□□ 0.31
Trav6-1A0A075B5Z8 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trav6-1A0A075B5Z8 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6-1A0A075B5Z8 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6-1A0A075B5Z8 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6-1A0A075B5Z8 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6-1A0A075B5Z8 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6-1A0A075B5Z8 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC16.95■□□□□ 0.3
Trav6-1A0A075B5Z8 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6-1A0A075B5Z8 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trav6-1A0A075B5Z8 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Trav6-1A0A075B5Z8 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav6-1A0A075B5Z8 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav6-1A0A075B5Z8 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Trav6-1A0A075B5Z8 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav6-1A0A075B5Z8 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trav6-1A0A075B5Z8 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC16.93■□□□□ 0.3
Trav6-1A0A075B5Z8 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav6-1A0A075B5Z8 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav6-1A0A075B5Z8 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Trav6-1A0A075B5Z8 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms