Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Nup88Q8CEC0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC32.41■■■□□ 2.78
Nup88Q8CEC0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.41■■■□□ 2.78
Nup88Q8CEC0 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
Nup88Q8CEC0 Gm26115-201ENSMUST00000175605 87 ntBASIC32.4■■■□□ 2.78
Nup88Q8CEC0 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32.37■■■□□ 2.77
Nup88Q8CEC0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32.36■■■□□ 2.77
Nup88Q8CEC0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Nup88Q8CEC0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32.34■■■□□ 2.77
Nup88Q8CEC0 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Nup88Q8CEC0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC32.26■■■□□ 2.75
Nup88Q8CEC0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Nup88Q8CEC0 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Nup88Q8CEC0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Nup88Q8CEC0 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32.2■■■□□ 2.75
Nup88Q8CEC0 Gm8109-201ENSMUST00000194076 746 ntBASIC32.17■■■□□ 2.74
Nup88Q8CEC0 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Nup88Q8CEC0 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
Nup88Q8CEC0 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
Nup88Q8CEC0 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32.06■■■□□ 2.72
Nup88Q8CEC0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
Nup88Q8CEC0 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32.02■■■□□ 2.72
Nup88Q8CEC0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.72
Nup88Q8CEC0 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
Nup88Q8CEC0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
Nup88Q8CEC0 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.96■■■□□ 2.71
Nup88Q8CEC0 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Nup88Q8CEC0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.93■■■□□ 2.7
Nup88Q8CEC0 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Nup88Q8CEC0 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Nup88Q8CEC0 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Nup88Q8CEC0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
Nup88Q8CEC0 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Nup88Q8CEC0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC31.79■■■□□ 2.68
Nup88Q8CEC0 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Nup88Q8CEC0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
Nup88Q8CEC0 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Nup88Q8CEC0 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.72■■■□□ 2.67
Nup88Q8CEC0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Nup88Q8CEC0 Gm17082-201ENSMUST00000166043 1091 ntBASIC31.68■■■□□ 2.66
Nup88Q8CEC0 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.68■■■□□ 2.66
Nup88Q8CEC0 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
Nup88Q8CEC0 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Nup88Q8CEC0 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Nup88Q8CEC0 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC31.57■■■□□ 2.64
Nup88Q8CEC0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.57■■■□□ 2.64
Nup88Q8CEC0 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Nup88Q8CEC0 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Nup88Q8CEC0 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Nup88Q8CEC0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
Nup88Q8CEC0 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Nup88Q8CEC0 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
Nup88Q8CEC0 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
Nup88Q8CEC0 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.39■■■□□ 2.62
Nup88Q8CEC0 Gm27322-201ENSMUST00000184007 104 ntBASIC31.38■■■□□ 2.61
Nup88Q8CEC0 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Nup88Q8CEC0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
Nup88Q8CEC0 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Nup88Q8CEC0 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Nup88Q8CEC0 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Nup88Q8CEC0 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.28■■■□□ 2.6
Nup88Q8CEC0 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
Nup88Q8CEC0 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC31.23■■■□□ 2.59
Nup88Q8CEC0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
Nup88Q8CEC0 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Nup88Q8CEC0 Gm24804-201ENSMUST00000174982 85 ntBASIC31.2■■■□□ 2.59
Nup88Q8CEC0 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Nup88Q8CEC0 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Nup88Q8CEC0 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
Nup88Q8CEC0 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Nup88Q8CEC0 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Nup88Q8CEC0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
Nup88Q8CEC0 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Nup88Q8CEC0 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
Nup88Q8CEC0 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Nup88Q8CEC0 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC31.03■■■□□ 2.56
Nup88Q8CEC0 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Nup88Q8CEC0 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Nup88Q8CEC0 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Nup88Q8CEC0 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC30.98■■■□□ 2.55
Nup88Q8CEC0 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC30.95■■■□□ 2.55
Nup88Q8CEC0 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.93■■■□□ 2.54
Nup88Q8CEC0 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Nup88Q8CEC0 Zfp131-207ENSMUST00000224946 1783 ntBASIC30.87■■■□□ 2.53
Nup88Q8CEC0 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Nup88Q8CEC0 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
Nup88Q8CEC0 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Nup88Q8CEC0 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Nup88Q8CEC0 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30.75■■■□□ 2.51
Nup88Q8CEC0 Gm2415-204ENSMUST00000190235 2004 ntBASIC30.73■■■□□ 2.51
Nup88Q8CEC0 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Nup88Q8CEC0 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC30.73■■■□□ 2.51
Nup88Q8CEC0 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30.72■■■□□ 2.51
Nup88Q8CEC0 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
Nup88Q8CEC0 AC166822.3-201ENSMUST00000227394 661 ntBASIC30.7■■■□□ 2.51
Nup88Q8CEC0 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.5
Nup88Q8CEC0 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
Nup88Q8CEC0 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Nup88Q8CEC0 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Nup88Q8CEC0 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms