Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Rfx1P48377 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Rfx1P48377 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC32.69■■■□□ 2.82
Rfx1P48377 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC32.68■■■□□ 2.82
Rfx1P48377 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC32.67■■■□□ 2.82
Rfx1P48377 Gm27325-201ENSMUST00000175467 74 ntBASIC32.64■■■□□ 2.82
Rfx1P48377 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Rfx1P48377 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC32.57■■■□□ 2.8
Rfx1P48377 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
Rfx1P48377 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC32.45■■■□□ 2.78
Rfx1P48377 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
Rfx1P48377 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Rfx1P48377 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Rfx1P48377 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC32.35■■■□□ 2.77
Rfx1P48377 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC32.33■■■□□ 2.77
Rfx1P48377 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC32.31■■■□□ 2.76
Rfx1P48377 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Rfx1P48377 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Rfx1P48377 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Rfx1P48377 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Rfx1P48377 Gm25238-201ENSMUST00000174914 89 ntBASIC32.23■■■□□ 2.75
Rfx1P48377 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
Rfx1P48377 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
Rfx1P48377 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC32.18■■■□□ 2.74
Rfx1P48377 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32.16■■■□□ 2.74
Rfx1P48377 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC32.16■■■□□ 2.74
Rfx1P48377 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC32.14■■■□□ 2.73
Rfx1P48377 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
Rfx1P48377 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC32.12■■■□□ 2.73
Rfx1P48377 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.09■■■□□ 2.73
Rfx1P48377 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.95■■■□□ 2.71
Rfx1P48377 Zfp131-207ENSMUST00000224946 1783 ntBASIC31.91■■■□□ 2.7
Rfx1P48377 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Rfx1P48377 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC31.91■■■□□ 2.7
Rfx1P48377 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.9■■■□□ 2.7
Rfx1P48377 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.9■■■□□ 2.7
Rfx1P48377 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC31.9■■■□□ 2.7
Rfx1P48377 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Rfx1P48377 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Rfx1P48377 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Rfx1P48377 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.85■■■□□ 2.69
Rfx1P48377 AC153504.1-201ENSMUST00000218379 2290 ntBASIC31.83■■■□□ 2.69
Rfx1P48377 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Rfx1P48377 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Rfx1P48377 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Rfx1P48377 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Rfx1P48377 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
Rfx1P48377 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
Rfx1P48377 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC31.72■■■□□ 2.67
Rfx1P48377 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Rfx1P48377 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
Rfx1P48377 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Rfx1P48377 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Rfx1P48377 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.63■■■□□ 2.65
Rfx1P48377 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Rfx1P48377 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Rfx1P48377 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.57■■■□□ 2.64
Rfx1P48377 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Rfx1P48377 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Rfx1P48377 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
Rfx1P48377 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Rfx1P48377 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Rfx1P48377 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.5■■■□□ 2.63
Rfx1P48377 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Rfx1P48377 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.48■■■□□ 2.63
Rfx1P48377 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Rfx1P48377 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Rfx1P48377 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC31.42■■■□□ 2.62
Rfx1P48377 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC31.4■■■□□ 2.62
Rfx1P48377 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Rfx1P48377 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Rfx1P48377 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
Rfx1P48377 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.35■■■□□ 2.61
Rfx1P48377 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
Rfx1P48377 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Rfx1P48377 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
Rfx1P48377 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
Rfx1P48377 Rab21-202ENSMUST00000218831 843 ntBASIC31.31■■■□□ 2.6
Rfx1P48377 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
Rfx1P48377 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Rfx1P48377 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.28■■■□□ 2.6
Rfx1P48377 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Rfx1P48377 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC31.26■■■□□ 2.6
Rfx1P48377 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC31.26■■■□□ 2.59
Rfx1P48377 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Rfx1P48377 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Rfx1P48377 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.22■■■□□ 2.59
Rfx1P48377 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
Rfx1P48377 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
Rfx1P48377 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
Rfx1P48377 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
Rfx1P48377 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Rfx1P48377 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Rfx1P48377 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.57
Rfx1P48377 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Rfx1P48377 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
Rfx1P48377 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Rfx1P48377 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Rfx1P48377 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.07■■■□□ 2.56
Rfx1P48377 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms