Protein–RNA interactions for Protein: A0A0G2JEM0

Trav3n-3, T cell receptor alpha variable 3D-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3n-3A0A0G2JEM0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav3n-3A0A0G2JEM0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav3n-3A0A0G2JEM0 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trav3n-3A0A0G2JEM0 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trav3n-3A0A0G2JEM0 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav3n-3A0A0G2JEM0 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav3n-3A0A0G2JEM0 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Trav3n-3A0A0G2JEM0 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trav3n-3A0A0G2JEM0 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trav3n-3A0A0G2JEM0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav3n-3A0A0G2JEM0 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav3n-3A0A0G2JEM0 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trav3n-3A0A0G2JEM0 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav3n-3A0A0G2JEM0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Trav3n-3A0A0G2JEM0 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trav3n-3A0A0G2JEM0 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav3n-3A0A0G2JEM0 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.22■□□□□ 0.83
Trav3n-3A0A0G2JEM0 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav3n-3A0A0G2JEM0 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav3n-3A0A0G2JEM0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Trav3n-3A0A0G2JEM0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav3n-3A0A0G2JEM0 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav3n-3A0A0G2JEM0 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Trav3n-3A0A0G2JEM0 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav3n-3A0A0G2JEM0 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trav3n-3A0A0G2JEM0 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav3n-3A0A0G2JEM0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav3n-3A0A0G2JEM0 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav3n-3A0A0G2JEM0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav3n-3A0A0G2JEM0 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trav3n-3A0A0G2JEM0 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Trav3n-3A0A0G2JEM0 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav3n-3A0A0G2JEM0 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.98■□□□□ 0.79
Trav3n-3A0A0G2JEM0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC19.97■□□□□ 0.79
Trav3n-3A0A0G2JEM0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav3n-3A0A0G2JEM0 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Trav3n-3A0A0G2JEM0 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav3n-3A0A0G2JEM0 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trav3n-3A0A0G2JEM0 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav3n-3A0A0G2JEM0 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trav3n-3A0A0G2JEM0 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trav3n-3A0A0G2JEM0 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Trav3n-3A0A0G2JEM0 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trav3n-3A0A0G2JEM0 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav3n-3A0A0G2JEM0 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Trav3n-3A0A0G2JEM0 Gm27325-201ENSMUST00000175467 74 ntBASIC19.85■□□□□ 0.77
Trav3n-3A0A0G2JEM0 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trav3n-3A0A0G2JEM0 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Trav3n-3A0A0G2JEM0 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trav3n-3A0A0G2JEM0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav3n-3A0A0G2JEM0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav3n-3A0A0G2JEM0 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC19.79■□□□□ 0.76
Trav3n-3A0A0G2JEM0 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trav3n-3A0A0G2JEM0 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav3n-3A0A0G2JEM0 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav3n-3A0A0G2JEM0 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav3n-3A0A0G2JEM0 Gm9905-201ENSMUST00000065740 1845 ntBASIC19.7■□□□□ 0.74
Trav3n-3A0A0G2JEM0 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav3n-3A0A0G2JEM0 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav3n-3A0A0G2JEM0 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav3n-3A0A0G2JEM0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC19.65■□□□□ 0.74
Trav3n-3A0A0G2JEM0 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav3n-3A0A0G2JEM0 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trav3n-3A0A0G2JEM0 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trav3n-3A0A0G2JEM0 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav3n-3A0A0G2JEM0 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav3n-3A0A0G2JEM0 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav3n-3A0A0G2JEM0 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav3n-3A0A0G2JEM0 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav3n-3A0A0G2JEM0 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav3n-3A0A0G2JEM0 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav3n-3A0A0G2JEM0 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav3n-3A0A0G2JEM0 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC19.58■□□□□ 0.72
Trav3n-3A0A0G2JEM0 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC19.57■□□□□ 0.72
Trav3n-3A0A0G2JEM0 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Trav3n-3A0A0G2JEM0 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC19.55■□□□□ 0.72
Trav3n-3A0A0G2JEM0 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Trav3n-3A0A0G2JEM0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav3n-3A0A0G2JEM0 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC19.51■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Gm25238-201ENSMUST00000174914 89 ntBASIC19.5■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC19.5■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav3n-3A0A0G2JEM0 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC19.48■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Gm6206-201ENSMUST00000133472 2199 ntBASIC19.48■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trav3n-3A0A0G2JEM0 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Trav3n-3A0A0G2JEM0 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav3n-3A0A0G2JEM0 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav3n-3A0A0G2JEM0 Gm2415-204ENSMUST00000190235 2004 ntBASIC19.42■□□□□ 0.7
Trav3n-3A0A0G2JEM0 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Trav3n-3A0A0G2JEM0 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav3n-3A0A0G2JEM0 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trav3n-3A0A0G2JEM0 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.41■□□□□ 0.7
Trav3n-3A0A0G2JEM0 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms