Protein–RNA interactions for Protein: A0A075B6B9

Trav6d-5, T cell receptor alpha variable 6D-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-5A0A075B6B9 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trav6d-5A0A075B6B9 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Trav6d-5A0A075B6B9 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trav6d-5A0A075B6B9 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trav6d-5A0A075B6B9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC22.18■■□□□ 1.14
Trav6d-5A0A075B6B9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trav6d-5A0A075B6B9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trav6d-5A0A075B6B9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22.14■■□□□ 1.13
Trav6d-5A0A075B6B9 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trav6d-5A0A075B6B9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC22.1■■□□□ 1.13
Trav6d-5A0A075B6B9 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC22.09■■□□□ 1.13
Trav6d-5A0A075B6B9 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trav6d-5A0A075B6B9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trav6d-5A0A075B6B9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Trav6d-5A0A075B6B9 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav6d-5A0A075B6B9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trav6d-5A0A075B6B9 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trav6d-5A0A075B6B9 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trav6d-5A0A075B6B9 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC22■■□□□ 1.11
Trav6d-5A0A075B6B9 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21.99■■□□□ 1.11
Trav6d-5A0A075B6B9 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Trav6d-5A0A075B6B9 Gm2415-204ENSMUST00000190235 2004 ntBASIC21.87■■□□□ 1.09
Trav6d-5A0A075B6B9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trav6d-5A0A075B6B9 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21.86■■□□□ 1.09
Trav6d-5A0A075B6B9 Gm27325-201ENSMUST00000175467 74 ntBASIC21.83■■□□□ 1.09
Trav6d-5A0A075B6B9 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav6d-5A0A075B6B9 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trav6d-5A0A075B6B9 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trav6d-5A0A075B6B9 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
Trav6d-5A0A075B6B9 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav6d-5A0A075B6B9 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav6d-5A0A075B6B9 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav6d-5A0A075B6B9 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.7■■□□□ 1.06
Trav6d-5A0A075B6B9 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trav6d-5A0A075B6B9 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Trav6d-5A0A075B6B9 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trav6d-5A0A075B6B9 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trav6d-5A0A075B6B9 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trav6d-5A0A075B6B9 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trav6d-5A0A075B6B9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trav6d-5A0A075B6B9 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trav6d-5A0A075B6B9 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Trav6d-5A0A075B6B9 Zfp131-207ENSMUST00000224946 1783 ntBASIC21.61■■□□□ 1.05
Trav6d-5A0A075B6B9 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trav6d-5A0A075B6B9 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trav6d-5A0A075B6B9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trav6d-5A0A075B6B9 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Trav6d-5A0A075B6B9 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Trav6d-5A0A075B6B9 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Trav6d-5A0A075B6B9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC21.56■■□□□ 1.04
Trav6d-5A0A075B6B9 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trav6d-5A0A075B6B9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trav6d-5A0A075B6B9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
Trav6d-5A0A075B6B9 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.53■■□□□ 1.04
Trav6d-5A0A075B6B9 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trav6d-5A0A075B6B9 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Trav6d-5A0A075B6B9 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Trav6d-5A0A075B6B9 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trav6d-5A0A075B6B9 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav6d-5A0A075B6B9 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav6d-5A0A075B6B9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav6d-5A0A075B6B9 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Trav6d-5A0A075B6B9 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Trav6d-5A0A075B6B9 Gm9905-201ENSMUST00000065740 1845 ntBASIC21.38■■□□□ 1.01
Trav6d-5A0A075B6B9 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.37■■□□□ 1.01
Trav6d-5A0A075B6B9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.37■■□□□ 1.01
Trav6d-5A0A075B6B9 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Trav6d-5A0A075B6B9 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav6d-5A0A075B6B9 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trav6d-5A0A075B6B9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC21.35■■□□□ 1.01
Trav6d-5A0A075B6B9 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav6d-5A0A075B6B9 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav6d-5A0A075B6B9 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav6d-5A0A075B6B9 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trav6d-5A0A075B6B9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1
Trav6d-5A0A075B6B9 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav6d-5A0A075B6B9 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trav6d-5A0A075B6B9 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Trav6d-5A0A075B6B9 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Trav6d-5A0A075B6B9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC21.3■■□□□ 1
Trav6d-5A0A075B6B9 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trav6d-5A0A075B6B9 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Trav6d-5A0A075B6B9 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Trav6d-5A0A075B6B9 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav6d-5A0A075B6B9 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trav6d-5A0A075B6B9 Gm6206-201ENSMUST00000133472 2199 ntBASIC21.25■□□□□ 0.99
Trav6d-5A0A075B6B9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC21.25■□□□□ 0.99
Trav6d-5A0A075B6B9 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav6d-5A0A075B6B9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav6d-5A0A075B6B9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav6d-5A0A075B6B9 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC21.17■□□□□ 0.98
Trav6d-5A0A075B6B9 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Trav6d-5A0A075B6B9 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav6d-5A0A075B6B9 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trav6d-5A0A075B6B9 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav6d-5A0A075B6B9 Zxda-201ENSMUST00000117281 2621 ntBASIC21.13■□□□□ 0.97
Trav6d-5A0A075B6B9 Gm25238-201ENSMUST00000174914 89 ntBASIC21.13■□□□□ 0.97
Trav6d-5A0A075B6B9 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC21.12■□□□□ 0.97
Trav6d-5A0A075B6B9 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav6d-5A0A075B6B9 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms