Protein–RNA interactions for Protein: A0A075B615

Trav4n-4, T cell receptor alpha variable 4D-4 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4n-4A0A075B615 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav4n-4A0A075B615 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav4n-4A0A075B615 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav4n-4A0A075B615 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav4n-4A0A075B615 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav4n-4A0A075B615 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trav4n-4A0A075B615 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav4n-4A0A075B615 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav4n-4A0A075B615 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav4n-4A0A075B615 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Trav4n-4A0A075B615 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.77■□□□□ 0.59
Trav4n-4A0A075B615 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav4n-4A0A075B615 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav4n-4A0A075B615 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav4n-4A0A075B615 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Trav4n-4A0A075B615 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav4n-4A0A075B615 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav4n-4A0A075B615 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav4n-4A0A075B615 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav4n-4A0A075B615 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav4n-4A0A075B615 Gm2415-204ENSMUST00000190235 2004 ntBASIC18.67■□□□□ 0.58
Trav4n-4A0A075B615 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav4n-4A0A075B615 Zxda-201ENSMUST00000117281 2621 ntBASIC18.66■□□□□ 0.58
Trav4n-4A0A075B615 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav4n-4A0A075B615 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav4n-4A0A075B615 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav4n-4A0A075B615 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav4n-4A0A075B615 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trav4n-4A0A075B615 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav4n-4A0A075B615 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav4n-4A0A075B615 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav4n-4A0A075B615 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav4n-4A0A075B615 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav4n-4A0A075B615 Gm9905-201ENSMUST00000065740 1845 ntBASIC18.53■□□□□ 0.56
Trav4n-4A0A075B615 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav4n-4A0A075B615 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav4n-4A0A075B615 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav4n-4A0A075B615 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav4n-4A0A075B615 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav4n-4A0A075B615 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav4n-4A0A075B615 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Trav4n-4A0A075B615 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav4n-4A0A075B615 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Trav4n-4A0A075B615 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav4n-4A0A075B615 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
Trav4n-4A0A075B615 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav4n-4A0A075B615 Gm6658-202ENSMUST00000209493 1885 ntBASIC18.44■□□□□ 0.54
Trav4n-4A0A075B615 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav4n-4A0A075B615 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trav4n-4A0A075B615 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC18.42■□□□□ 0.54
Trav4n-4A0A075B615 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trav4n-4A0A075B615 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trav4n-4A0A075B615 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav4n-4A0A075B615 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trav4n-4A0A075B615 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav4n-4A0A075B615 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC18.35■□□□□ 0.53
Trav4n-4A0A075B615 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav4n-4A0A075B615 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trav4n-4A0A075B615 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav4n-4A0A075B615 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC18.34■□□□□ 0.53
Trav4n-4A0A075B615 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav4n-4A0A075B615 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav4n-4A0A075B615 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trav4n-4A0A075B615 Gm6206-201ENSMUST00000133472 2199 ntBASIC18.31■□□□□ 0.52
Trav4n-4A0A075B615 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav4n-4A0A075B615 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav4n-4A0A075B615 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav4n-4A0A075B615 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav4n-4A0A075B615 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav4n-4A0A075B615 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav4n-4A0A075B615 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trav4n-4A0A075B615 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav4n-4A0A075B615 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav4n-4A0A075B615 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav4n-4A0A075B615 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC18.25■□□□□ 0.51
Trav4n-4A0A075B615 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav4n-4A0A075B615 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav4n-4A0A075B615 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav4n-4A0A075B615 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav4n-4A0A075B615 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav4n-4A0A075B615 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav4n-4A0A075B615 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav4n-4A0A075B615 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav4n-4A0A075B615 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav4n-4A0A075B615 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trav4n-4A0A075B615 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav4n-4A0A075B615 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav4n-4A0A075B615 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav4n-4A0A075B615 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav4n-4A0A075B615 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav4n-4A0A075B615 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
Trav4n-4A0A075B615 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav4n-4A0A075B615 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav4n-4A0A075B615 Gm24109-201ENSMUST00000175489 103 ntBASIC18.1■□□□□ 0.49
Trav4n-4A0A075B615 AC153911.1-202ENSMUST00000218534 1034 ntBASIC18.09■□□□□ 0.49
Trav4n-4A0A075B615 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Trav4n-4A0A075B615 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trav4n-4A0A075B615 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trav4n-4A0A075B615 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
Trav4n-4A0A075B615 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms