Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Use1Q9CQ56 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.09■□□□□ 0.81
Use1Q9CQ56 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Use1Q9CQ56 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Use1Q9CQ56 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Use1Q9CQ56 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Use1Q9CQ56 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Use1Q9CQ56 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Use1Q9CQ56 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Use1Q9CQ56 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
Use1Q9CQ56 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Use1Q9CQ56 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
Use1Q9CQ56 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Use1Q9CQ56 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.8
Use1Q9CQ56 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Use1Q9CQ56 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Use1Q9CQ56 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Use1Q9CQ56 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Use1Q9CQ56 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Use1Q9CQ56 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.07■□□□□ 0.8
Use1Q9CQ56 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.07■□□□□ 0.8
Use1Q9CQ56 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.07■□□□□ 0.8
Use1Q9CQ56 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Use1Q9CQ56 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Use1Q9CQ56 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Use1Q9CQ56 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Use1Q9CQ56 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
Use1Q9CQ56 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Use1Q9CQ56 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Use1Q9CQ56 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Use1Q9CQ56 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.05■□□□□ 0.8
Use1Q9CQ56 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Use1Q9CQ56 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Use1Q9CQ56 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Use1Q9CQ56 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Use1Q9CQ56 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.05■□□□□ 0.8
Use1Q9CQ56 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Use1Q9CQ56 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Use1Q9CQ56 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.04■□□□□ 0.8
Use1Q9CQ56 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
Use1Q9CQ56 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Use1Q9CQ56 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Use1Q9CQ56 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Use1Q9CQ56 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
Use1Q9CQ56 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Use1Q9CQ56 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Use1Q9CQ56 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC20.03■□□□□ 0.8
Use1Q9CQ56 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC20.03■□□□□ 0.8
Use1Q9CQ56 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Use1Q9CQ56 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Use1Q9CQ56 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Use1Q9CQ56 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.03■□□□□ 0.8
Use1Q9CQ56 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Use1Q9CQ56 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Use1Q9CQ56 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Use1Q9CQ56 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.02■□□□□ 0.8
Use1Q9CQ56 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Use1Q9CQ56 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Use1Q9CQ56 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Use1Q9CQ56 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Use1Q9CQ56 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.02■□□□□ 0.79
Use1Q9CQ56 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.02■□□□□ 0.79
Use1Q9CQ56 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.02■□□□□ 0.79
Use1Q9CQ56 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Use1Q9CQ56 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Use1Q9CQ56 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Use1Q9CQ56 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Use1Q9CQ56 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Use1Q9CQ56 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Use1Q9CQ56 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Use1Q9CQ56 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Use1Q9CQ56 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Use1Q9CQ56 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Use1Q9CQ56 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Use1Q9CQ56 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.99■□□□□ 0.79
Use1Q9CQ56 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Use1Q9CQ56 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Use1Q9CQ56 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Use1Q9CQ56 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Use1Q9CQ56 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Use1Q9CQ56 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Use1Q9CQ56 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Use1Q9CQ56 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Use1Q9CQ56 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Use1Q9CQ56 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Use1Q9CQ56 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Use1Q9CQ56 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Use1Q9CQ56 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Use1Q9CQ56 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
Use1Q9CQ56 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Use1Q9CQ56 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Use1Q9CQ56 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.95■□□□□ 0.78
Use1Q9CQ56 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Use1Q9CQ56 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Use1Q9CQ56 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.94■□□□□ 0.78
Use1Q9CQ56 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.94■□□□□ 0.78
Use1Q9CQ56 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Use1Q9CQ56 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Use1Q9CQ56 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Use1Q9CQ56 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms